Mercurial > repos > rnateam > mafft

comparison tool_dependencies.xml @ 6:e4a0bd9ea48c draft default tip

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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mafft commit eff9db2cd18c82a7de37851571b8989b48014c71"
author rnateam
date Wed, 15 Apr 2020 19:28:51 +0000
parents dd4a533a0e3c
children
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5:dd4a533a0e3c 6:e4a0bd9ea48c
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="mafft" version="7.221">
4 <install version="1.0">
5 <actions>
6 <action type="download_by_url">https://raw.githubusercontent.com/bgruening/download_store/master/MAFFT/mafft-7.221-with-extensions-src.tgz</action>
7 <action type="change_directory">./core</action>
8 <action type="shell_command">sed -i "s|\(PREFIX = \).*$|\1$INSTALL_DIR|" Makefile</action>
9 <action type="shell_command">make clean; make; make install</action>
10 <action type="change_directory">../extensions</action>
11 <action type="shell_command">sed -i "s|\(PREFIX = \).*$|\1$INSTALL_DIR|" Makefile</action>
12 <action type="shell_command">make clean; make; make install</action>
13 <action type="set_environment">
14 <environment_variable name="MAFFT_ROOT_PATH" action="set_to">$INSTALL_DIR</environment_variable>
15 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
16 </action>
17 </actions>
18 </install>
19 <readme>
20 </readme>
21 </package>
22 </tool_dependency>