Mercurial > repos > rnateam > locarna_exparnap

annotate test-data/archaea-default.stdout @ 0:a2bc02c2bebc draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/locarna commit 287021573c592fdb70fdbbc88943aa16a8740fc0
author rnateam
date Fri, 13 Jan 2017 16:44:17 -0500
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
a2bc02c2bebc planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/locarna commit 287021573c592fdb70fdbbc88943aa16a8740fc0
rnateam
parents:
diff changeset
1 mLocARNA --- multiple Local (and global) Alignment of RNA --- LocARNA 1.9.0
a2bc02c2bebc planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/locarna commit 287021573c592fdb70fdbbc88943aa16a8740fc0
rnateam
parents:
diff changeset
2 Copyright Sebastian Will
a2bc02c2bebc planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/locarna commit 287021573c592fdb70fdbbc88943aa16a8740fc0
rnateam
parents:
diff changeset
3
a2bc02c2bebc planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/locarna commit 287021573c592fdb70fdbbc88943aa16a8740fc0
rnateam
parents:
diff changeset
4 Compute pair probs ...
a2bc02c2bebc planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/locarna commit 287021573c592fdb70fdbbc88943aa16a8740fc0
rnateam
parents:
diff changeset
5 Compute pairwise alignments ...
a2bc02c2bebc planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/locarna commit 287021573c592fdb70fdbbc88943aa16a8740fc0
rnateam
parents:
diff changeset
6 Perform progressive alignment ...
a2bc02c2bebc planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/locarna commit 287021573c592fdb70fdbbc88943aa16a8740fc0
rnateam
parents:
diff changeset
7
a2bc02c2bebc planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/locarna commit 287021573c592fdb70fdbbc88943aa16a8740fc0
rnateam
parents:
diff changeset
8
a2bc02c2bebc planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/locarna commit 287021573c592fdb70fdbbc88943aa16a8740fc0
rnateam
parents:
diff changeset
9
a2bc02c2bebc planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/locarna commit 287021573c592fdb70fdbbc88943aa16a8740fc0
rnateam
parents:
diff changeset
10 vhuU AG-CUCACAACCGAACCC-AU------------UUGGGAGGUUGUGAGCU-
a2bc02c2bebc planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/locarna commit 287021573c592fdb70fdbbc88943aa16a8740fc0
rnateam
parents:
diff changeset
11 fwdB AU-GUUGGAGGGGAACCC-GU------------AAGGGACCCUCCAAGAU-
a2bc02c2bebc planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/locarna commit 287021573c592fdb70fdbbc88943aa16a8740fc0
rnateam
parents:
diff changeset
12 selD UUACGAUGUGCCGAACCCUUU------------AAGGGAGGCACAUCGAAA
a2bc02c2bebc planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/locarna commit 287021573c592fdb70fdbbc88943aa16a8740fc0
rnateam
parents:
diff changeset
13 hdrA GG--CACCACUCGAAGGC--U------------AAGCCAAAGUGGUG-CU-
a2bc02c2bebc planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/locarna commit 287021573c592fdb70fdbbc88943aa16a8740fc0
rnateam
parents:
diff changeset
14 vhuD GU--UCUCUCGGGAACCCGUC------------AAGGGACCGAGAGA-AC-
a2bc02c2bebc planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/locarna commit 287021573c592fdb70fdbbc88943aa16a8740fc0
rnateam
parents:
diff changeset
15 fruA ---CCUCGAGGGGAACCC-GA------------AAGGGACCCGAGAGG---
a2bc02c2bebc planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/locarna commit 287021573c592fdb70fdbbc88943aa16a8740fc0
rnateam
parents:
diff changeset
16 fdhA CG-CCACCCUGCGAACCCAAUAUAAAAUAAUACAAGGGAGCAG-GUGGCG-
a2bc02c2bebc planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/locarna commit 287021573c592fdb70fdbbc88943aa16a8740fc0
rnateam
parents:
diff changeset
17
a2bc02c2bebc planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/locarna commit 287021573c592fdb70fdbbc88943aa16a8740fc0
rnateam
parents:
diff changeset
18 alifold ((.(((((((((...(((.................))).))))))))))). (-31.59 = -20.01 + -11.58)