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annotate convert.xml @ 0:362e58e449ac draft default tip

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planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
author rnateam
date Mon, 26 Dec 2016 04:01:31 -0500
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362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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1 <tool id="graphicsmagick_image_convert" name="Image Converter" version="@VERSION@">
362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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2 <description></description>
362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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3 <macros>
362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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4 <import>macros.xml</import>
362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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5 </macros>
362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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6 <expand macro="requirements" />
362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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7 <command detect_errors="aggressive">
362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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8 <![CDATA[
362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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9 ln -s '${input}' input.${input.ext}
362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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10 &&
362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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11 #set $trans_options = str($transformations).replace(',', ' ')
362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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12
362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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13 convert $trans_options input.${input.ext} temp.${output_format}
362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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14 &&
362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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15 mv temp.${output_format} '${output}'
362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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16 ]]>
362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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17 </command>
362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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18 <inputs>
362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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19 <param format="jpg,png,bmp,gif,svg,eps,tiff,xcf" name="input" type="data" label="Image to convert" />
362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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20 <param name="transformations" multiple="true" type="select" display="checkboxes" label="Transformations">
362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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21 <option value="-flip">flip vertically</option>
362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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22 <option value="-flop">flip horizontally</option>
362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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23 <option value="-rotate 90">rotate 90 degree to the right</option>
362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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24 <option value="-rotate 270">rotate 90 degree to the left</option>
362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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25 <option value="-rotate 180">rotate 180 degree</option>
362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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26 </param>
362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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27 <param name="output_format" type="select" label="Output Format">
362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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28 <option value="jpeg">jpg</option>
362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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29 <option value="png">png</option>
362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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30 <option value="bmp">bmp</option>
362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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31 <option value="gif">gif</option>
362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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32 <option value="svg">svg</option>
362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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33 <option value="eps">eps</option>
362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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34 <option value="tiff">tiff</option>
362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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35 </param>
362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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36 </inputs>
362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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37 <outputs>
362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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38 <data format="png" name="output">
362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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39 <change_format>
362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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40 <when input="output_format" value="jpeg" format="jpg" />
362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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41 <when input="output_format" value="png" format="png" />
362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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42 <when input="output_format" value="bmp" format="bmp" />
362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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43 <when input="output_format" value="gif" format="gif" />
362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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44 <when input="output_format" value="svg" format="svg" />
362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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45 <when input="output_format" value="eps" format="eps" />
362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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46 <when input="output_format" value="tiff" format="tiff" />
362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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47 </change_format>
362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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48 </data>
362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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49 </outputs>
362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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50 <tests>
362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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51 <test>
362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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52 <param name="input" value="donald.jpg" />
362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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53 <param name="output_format" value="png" />
362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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54 <param name="transformations" value="-flip" />
362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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55 <output name="output" file="result_image_convert_1.png" compare="sim_size" delta="20000" />
362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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56 </test>
362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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57 </tests>
362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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58 <help>
362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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59 <![CDATA[
362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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60
362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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61 **What it does**
362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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62
362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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63 This tool converts an image into another format. You can also do some transformations like flipping or rotating.
362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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64 Here you can see, how -flip behaves:
362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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65
362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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66 Input:
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67
362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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68 .. image:: $PATH_TO_IMAGES/donald.jpg
362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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69
362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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70 Output:
362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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71
362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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72 .. image:: $PATH_TO_IMAGES/donald.png
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73
362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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74 ]]>
362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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75 </help>
362e58e449ac planemo upload for repository https://github.com/bgruening/galaxytools/new/gm/tools/image_processing/image_processing/ commit 900ad61c96390c035780ef4fc5b290b3011f18eb
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76 <expand macro="citations" />
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77 </tool>