graphclust_postprocessing: glob

annotate glob_report.xml @ 10:a9965909555e draft default tip

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/GraphClust/CollectResults commit 4406735e44aba20859c252be39f4e99df28c7a92

author	rnateam
date	Sat, 27 Oct 2018 13:13:33 -0400
parents	08a3e826ccd7
children

rev	line source
10 a9965909555e planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/GraphClust/CollectResults commit 4406735e44aba20859c252be39f4e99df28c7a92 rnateam parents: 9 diff changeset	1 <tool id="glob_report" name="cluster_collection_report" version="0.5" >
3 a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	2 <requirements>
10 a9965909555e planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/GraphClust/CollectResults commit 4406735e44aba20859c252be39f4e99df28c7a92 rnateam parents: 9 diff changeset	3 <requirement type="package" version="0.6.0">graphclust-wrappers</requirement>
3 a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	4 <requirement type="package" version='0.5'>perl-array-utils</requirement>
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	5 <requirement type="package" version='0.18.1'>scikit-learn</requirement>
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	6 <requirement type="package" version='1.8.10'>locarna</requirement>
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	7 <requirement type="package" version='2.1'>rnaz</requirement>
8 75d8e05db621 planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 6767a5ffb02052c844e9d862c79912f998f39d8e rnateam parents: 7 diff changeset	8 <requirement type="package" version="1.1.2">infernal</requirement>
3 a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	9 <requirement type="package" version='2.2.10'>viennarna</requirement>
10 a9965909555e planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/GraphClust/CollectResults commit 4406735e44aba20859c252be39f4e99df28c7a92 rnateam parents: 9 diff changeset	10 <requirement type="package" version='1.3.30'>graphicsmagick</requirement>
8 75d8e05db621 planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 6767a5ffb02052c844e9d862c79912f998f39d8e rnateam parents: 7 diff changeset	11 <requirement type="package" version='0.6.1'>rscape</requirement>
75d8e05db621 planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 6767a5ffb02052c844e9d862c79912f998f39d8e rnateam parents: 7 diff changeset	12 <requirement type="package" version='6.0'>unzip</requirement>
3 a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	13 </requirements>
10 a9965909555e planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/GraphClust/CollectResults commit 4406735e44aba20859c252be39f4e99df28c7a92 rnateam parents: 9 diff changeset	14 <command detect_errors="exit_code">
a9965909555e planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/GraphClust/CollectResults commit 4406735e44aba20859c252be39f4e99df28c7a92 rnateam parents: 9 diff changeset	15 <![CDATA[
0 4503c49f31c4 planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 21aaee40723b5341b4236edeb0e72995c2054053 rnateam parents: diff changeset	16 unzip $FASTA &> /dev/null &&
10 a9965909555e planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/GraphClust/CollectResults commit 4406735e44aba20859c252be39f4e99df28c7a92 rnateam parents: 9 diff changeset	17 mkdir ./CMSEARCH &&
a9965909555e planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/GraphClust/CollectResults commit 4406735e44aba20859c252be39f4e99df28c7a92 rnateam parents: 9 diff changeset	18 mkdir ./MODEL &&
a9965909555e planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/GraphClust/CollectResults commit 4406735e44aba20859c252be39f4e99df28c7a92 rnateam parents: 9 diff changeset	19 #import re
0 4503c49f31c4 planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 21aaee40723b5341b4236edeb0e72995c2054053 rnateam parents: diff changeset	20 #for $cms_res in $cmsearch_results:
10 a9965909555e planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/GraphClust/CollectResults commit 4406735e44aba20859c252be39f4e99df28c7a92 rnateam parents: 9 diff changeset	21 #set $safename_cm = re.sub('[^\w\-_\.]', '_', $cms_res.element_identifier)
a9965909555e planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/GraphClust/CollectResults commit 4406735e44aba20859c252be39f4e99df28c7a92 rnateam parents: 9 diff changeset	22 ln -f -s '$cms_res' ./CMSEARCH/$safename_cm &&
0 4503c49f31c4 planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 21aaee40723b5341b4236edeb0e72995c2054053 rnateam parents: diff changeset	23 #end for
4503c49f31c4 planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 21aaee40723b5341b4236edeb0e72995c2054053 rnateam parents: diff changeset	24 #for $mods in $model_tree_files:
10 a9965909555e planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/GraphClust/CollectResults commit 4406735e44aba20859c252be39f4e99df28c7a92 rnateam parents: 9 diff changeset	25 #set $safename_tr = re.sub('[^\w\-_\.]', '_', $mods.element_identifier)
a9965909555e planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/GraphClust/CollectResults commit 4406735e44aba20859c252be39f4e99df28c7a92 rnateam parents: 9 diff changeset	26 ln -f -s '$mods' ./MODEL/$safename_tr &&
0 4503c49f31c4 planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 21aaee40723b5341b4236edeb0e72995c2054053 rnateam parents: diff changeset	27 #end for
8 75d8e05db621 planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 6767a5ffb02052c844e9d862c79912f998f39d8e rnateam parents: 7 diff changeset	28
3 a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	29 'glob_res.pl'
2 6c88ad83de28 planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 287021573c592fdb70fdbbc88943aa16a8740fc0 rnateam parents: 0 diff changeset	30 $merge_cluster_ol
6c88ad83de28 planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 287021573c592fdb70fdbbc88943aa16a8740fc0 rnateam parents: 0 diff changeset	31 $merge_overlap
6c88ad83de28 planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 287021573c592fdb70fdbbc88943aa16a8740fc0 rnateam parents: 0 diff changeset	32 $min_cluster_size
6c88ad83de28 planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 287021573c592fdb70fdbbc88943aa16a8740fc0 rnateam parents: 0 diff changeset	33 $cm_min_bitscore
6c88ad83de28 planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 287021573c592fdb70fdbbc88943aa16a8740fc0 rnateam parents: 0 diff changeset	34 $cm_max_eval
6c88ad83de28 planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 287021573c592fdb70fdbbc88943aa16a8740fc0 rnateam parents: 0 diff changeset	35 $cm_bitscore_sig
6c88ad83de28 planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 287021573c592fdb70fdbbc88943aa16a8740fc0 rnateam parents: 0 diff changeset	36 $partition_type ''
6c88ad83de28 planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 287021573c592fdb70fdbbc88943aa16a8740fc0 rnateam parents: 0 diff changeset	37 $cut_type
6c88ad83de28 planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 287021573c592fdb70fdbbc88943aa16a8740fc0 rnateam parents: 0 diff changeset	38 $results_top_num
0 4503c49f31c4 planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 21aaee40723b5341b4236edeb0e72995c2054053 rnateam parents: diff changeset	39 #if $iteration_num.iteration_num_selector:
4503c49f31c4 planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 21aaee40723b5341b4236edeb0e72995c2054053 rnateam parents: diff changeset	40 $iteration_num.CI
4503c49f31c4 planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 21aaee40723b5341b4236edeb0e72995c2054053 rnateam parents: diff changeset	41 $final_partition_soft
4503c49f31c4 planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 21aaee40723b5341b4236edeb0e72995c2054053 rnateam parents: diff changeset	42 $final_partition_used_cmsearch
5 fc701681ca6e planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit b'7e5cd452018ae9507c2d1cd13dd688a747550393\n' rnateam parents: 4 diff changeset	43 '$combined_cm'
fc701681ca6e planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit b'7e5cd452018ae9507c2d1cd13dd688a747550393\n' rnateam parents: 4 diff changeset	44
0 4503c49f31c4 planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 21aaee40723b5341b4236edeb0e72995c2054053 rnateam parents: diff changeset	45 #end if
4503c49f31c4 planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 21aaee40723b5341b4236edeb0e72995c2054053 rnateam parents: diff changeset	46
3 a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	47 #if str($advanced_opts.advanced_opts_selector) == "show":
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	48 #if str($advanced_opts.param_type.param_type_selector) == "gclust":
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	49 $advanced_opts.param_type.p
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	50 $advanced_opts.param_type.max_diff_am
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	51 $advanced_opts.param_type.max_diff
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	52 $advanced_opts.param_type.tau
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	53 $advanced_opts.param_type.struct_weight
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	54 $advanced_opts.param_type.indel_opening
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	55 $advanced_opts.param_type.indel
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	56 $advanced_opts.param_type.alifold_consensus_dp
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	57 #end if
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	58 #end if
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	59
0 4503c49f31c4 planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 21aaee40723b5341b4236edeb0e72995c2054053 rnateam parents: diff changeset	60 &&
9 08a3e826ccd7 planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit b8f82a8101d9eb74c8dbac51b8a0c75585a888a2 rnateam parents: 8 diff changeset	61 python '$__tool_directory__/evaluation.py' FASTA/ RESULTS/
8 75d8e05db621 planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 6767a5ffb02052c844e9d862c79912f998f39d8e rnateam parents: 7 diff changeset	62
3 a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	63 #if $cdhit:
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	64 &&
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	65 python '$__tool_directory__/addCdhitseqs.py' '$cdhit'
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	66 #end if
0 4503c49f31c4 planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 21aaee40723b5341b4236edeb0e72995c2054053 rnateam parents: diff changeset	67 ]]>
3 a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	68 </command>
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	69 <inputs>
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	70 <param type="data" name="FASTA" format="zip" />
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	71 <param type="data" name="cmsearch_results" format="tabular" multiple="True"/>
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	72 <param type="data" name="model_tree_files" format="txt" multiple="True"/>
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	73 <param name="partition_type" type="boolean" checked="True" truevalue="0" falsevalue="1" label="Hard partition"/>
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	74 <param name="cut_type" type="boolean" checked="True" truevalue="0" falsevalue="1" label="Use CM score for cutoff" help="otherwise use E-value"/>
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	75 <param type="data" name="cdhit" format="txt" optional="true"/>
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	76 <conditional name="iteration_num">
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	77 <param name="iteration_num_selector" type="boolean" checked="no" label="Multiple iterations" help="for single iteration- NO, for multiple-YES"/>
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	78 <when value="true">
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	79 <param name="CI" type="integer" value="2" size="5" label="Number of current iteration "/>
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	80 <param type="data" name="final_partition_soft" format="txt" />
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	81 <param type="data" name="final_partition_used_cmsearch" format="txt" />
5 fc701681ca6e planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit b'7e5cd452018ae9507c2d1cd13dd688a747550393\n' rnateam parents: 4 diff changeset	82 <param type="data" name="combined_cm" format="txt" />
3 a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	83 </when>
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	84 <when value="false" ></when>
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	85 </conditional>
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	86 <param name="merge_cluster_ol" type="float" value="0.66" size="5" label="merge_cluster_ol" help=""/>
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	87 <param name="merge_overlap" type="float" value="0.51" size="5" label="merge_overlap" help=""/>
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	88 <param name="min_cluster_size" type="integer" value="3" size="5" label="min_cluster_size" help=""/>
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	89 <param name="cm_min_bitscore" type="integer" value="20" size="5" label="cm_min_bitscore" help=""/>
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	90 <param name="cm_max_eval" type="float" value="0.001" size="5" label="cm_max_eval" help=""/>
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	91 <param name="cm_bitscore_sig" type="integer" value="1" size="5" label="cm_bitscore_sig" help=""/>
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	92 <param name="results_top_num" type="integer" value="5" size="5" label="results_top_num" help=""/>
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	93
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	94 <conditional name="advanced_opts">
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	95 <param name="advanced_opts_selector" type="select" label="Advanced Options">
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	96 <option value="hide" selected="True">Hide</option>
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	97 <option value="show">Show</option>
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	98 </param>
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	99 <when value="hide"></when>
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	100 <when value="show">
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	101
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	102 <conditional name="param_type">
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	103 <param name="param_type_selector" type="select" label="Choose the type of parameters">
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	104 <option value="locarna">LocARNA defaults</option>
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	105 <option value="gclust" selected="True">GrapClust defaults(changeable)</option>
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	106 </param>
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	107 <when value="gclust">
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	108
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	109 <param name="p" type="float" value="0.001" size="5" label="minimal probability" help="-p"/>
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	110 <param name="max_diff_am" type="integer" value="50" size="5" label=" maximal difference for sizes of matched arcs" help="--max-diff-am"/>
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	111 <param argument="tau" type="integer" value="50" min="0" max="200" label="Sequence contribution at structure match in percent"/>
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	112 <param name="max_diff" type="integer" value="100" size="5" label="maximal difference for alignment traces" help="--max-diff"/>
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	113
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	114 <param name="struct_weight" argument="struct-weight"
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	115 label="Structure weight" type="integer"
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	116 value="180" min="0" max="800" />
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	117 <param name="indel_opening" argument="indel-opening"
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	118 label="Indel opening score" type="integer"
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	119 value="-400" max="0" min="-1500" />
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	120 <param argument="indel" label="Indel score" type="integer"
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	121 value="-200" min="-1000" max="0" />
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	122
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	123 <param name="alifold_consensus_dp"
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	124 type="boolean" checked="True"
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	125 truevalue="--alifold-consensus-dp" falsevalue=" "
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	126 label="Compute consensus dot plot by alifold" />
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	127
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	128 </when>
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	129 <when value="locarna">
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	130 </when>
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	131 </conditional>
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	132
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	133 </when>
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	134 </conditional>
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	135
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	136 </inputs>
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	137 <outputs>
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	138 <data name="final_stats" format="txt" from_work_dir="RESULTS/cluster.final.stats" label="cluster.final.stats" />
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	139 <data name="tableForEval" format="tabular" from_work_dir="RESULTS/fullTab.tabular" label="tableForEval" />
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	140 <data name="final_soft" format="txt" from_work_dir="RESULTS/partitions/final_partition.soft" label="soft_part" />
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	141 <data name="final_used_cmsearch" format="txt" from_work_dir="RESULTS/partitions/final_partition.used_cmsearch" label="final_partition_used_cmsearch" />
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	142 <data name="evaluation" format="txt" from_work_dir="RESULTS/evaluation.txt" label="evaluation_of_clusters" />
6 8d02b983f97a planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 4dd7269185f6fb9bdc007028007d6540f4cf057d rnateam parents: 5 diff changeset	143 <data name="combined_cm_out" format="txt" from_work_dir="combined_cm_out" label="combined_cmsearch_output" />
3 a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	144 <collection name="clusters" type="list" label="CLUSTERS">
10 a9965909555e planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/GraphClust/CollectResults commit 4406735e44aba20859c252be39f4e99df28c7a92 rnateam parents: 9 diff changeset	145 <discover_datasets format="txt" pattern="(?P<name>^.*\.all$)" directory="RESULTS" />
a9965909555e planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/GraphClust/CollectResults commit 4406735e44aba20859c252be39f4e99df28c7a92 rnateam parents: 9 diff changeset	146 </collection>
a9965909555e planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/GraphClust/CollectResults commit 4406735e44aba20859c252be39f4e99df28c7a92 rnateam parents: 9 diff changeset	147 <collection name="allFasta" type="list" label="sequences.fa">
a9965909555e planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/GraphClust/CollectResults commit 4406735e44aba20859c252be39f4e99df28c7a92 rnateam parents: 9 diff changeset	148 <discover_datasets format="fasta" pattern="(?P<name>^.*\.all.fa$)" directory="RESULTS" />
3 a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	149 </collection>
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	150 <collection name="partitions" type="list" label="Partitions">
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	151 <discover_datasets pattern="(?P<name>^.*$)" directory="RESULTS/partitions" />
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	152 </collection>
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	153 <collection name="topSecondaryStruct" type="list" label="Top $results_top_num alirna.ps">
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	154 <discover_datasets format="png" pattern="(?P<name>^.*\.alirna.png$)" />
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	155 </collection>
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	156 <collection name="topDot" type="list" label="Top $results_top_num aln.ps">
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	157 <discover_datasets format="png" pattern="(?P<name>^.*\.aln.png$)" />
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	158 </collection>
4 dbcea781900e planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit f971832d2b34a182314e5201ea6895dd207c5923 rnateam parents: 3 diff changeset	159 <collection name="rscapePlot" type="list" label="R-scape Plot">
dbcea781900e planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit f971832d2b34a182314e5201ea6895dd207c5923 rnateam parents: 3 diff changeset	160 <discover_datasets format="pdf" pattern="(?P<name>^.*\.pdf$)" />
dbcea781900e planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit f971832d2b34a182314e5201ea6895dd207c5923 rnateam parents: 3 diff changeset	161 </collection>
3 a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	162 <data name="RESULTS_zip" format="zip" from_work_dir="RESULTS.zip" label="RESULTS.zip" />
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	163 </outputs>
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	164 <tests>
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	165 <test>
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	166 <param name="FASTA" value="FASTA.zip" ftype="searchgui_archive"/>
7 911e58500508 planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 65d322f9ab2f24d65b307f3553589149a1d678d5 rnateam parents: 6 diff changeset	167 <param name="cmsearch_results" value="1.1.tree,1.2.tree"/>
911e58500508 planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 65d322f9ab2f24d65b307f3553589149a1d678d5 rnateam parents: 6 diff changeset	168 <param name="model_tree_files" value="1.1.model.tree.fa,1.2.model.tree.fa"/>
3 a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	169 <param name="partition_type" value="0"/>
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	170 <param name="cut_type" value="0"/>
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	171 <conditional name="iteration_num">
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	172 <param name="iteration_num_selector" value="false"/>
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	173 </conditional>
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	174 <param name="merge_cluster_ol" value="0.66"/>
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	175 <param name="merge_overlap" value="0.51"/>
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	176 <param name="min_cluster_size" value="3"/>
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	177 <param name="cm_min_bitscore" value="20"/>
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	178 <param name="cm_max_eval" value="0.001"/>
7 911e58500508 planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 65d322f9ab2f24d65b307f3553589149a1d678d5 rnateam parents: 6 diff changeset	179 <param name="cm_bitscore_sig" value="0"/>
10 a9965909555e planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/GraphClust/CollectResults commit 4406735e44aba20859c252be39f4e99df28c7a92 rnateam parents: 9 diff changeset	180 <param name="results_top_num" value="5"/>
3 a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	181 <output name="final_stats" file="RESULTS/cluster.final.stats" />
10 a9965909555e planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/GraphClust/CollectResults commit 4406735e44aba20859c252be39f4e99df28c7a92 rnateam parents: 9 diff changeset	182 <output name="combined_cm_out" file="combined_cm_out"/>
a9965909555e planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/GraphClust/CollectResults commit 4406735e44aba20859c252be39f4e99df28c7a92 rnateam parents: 9 diff changeset	183 <output name="evaluation" file="evaluation1.txt"/>
3 a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	184 <output_collection name="clusters" type="list">
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	185 <element name="1.cluster.all" file="RESULTS/1.cluster.all" compare="contains"/>
10 a9965909555e planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/GraphClust/CollectResults commit 4406735e44aba20859c252be39f4e99df28c7a92 rnateam parents: 9 diff changeset	186 <element name="2.cluster.all" file="RESULTS/2.cluster.all" compare="contains"/>
3 a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	187 </output_collection>
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	188 <output_collection name="partitions">
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	189 <element name="final_overlap.map" file="RESULTS/partitions/final_overlap.map" compare="contains">
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	190 <assert_contents>
7 911e58500508 planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 65d322f9ab2f24d65b307f3553589149a1d678d5 rnateam parents: 6 diff changeset	191 <has_text text="1.1 1.1 " />
911e58500508 planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 65d322f9ab2f24d65b307f3553589149a1d678d5 rnateam parents: 6 diff changeset	192 <has_text text="1.2 1.2" />
3 a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	193 </assert_contents>
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	194 </element>
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	195 <element name="final_overlap.matrix" file="RESULTS/partitions/final_overlap.matrix" compare="contains">
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	196 <assert_contents>
7 911e58500508 planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 65d322f9ab2f24d65b307f3553589149a1d678d5 rnateam parents: 6 diff changeset	197 <has_text text="MODEL CLASS 0 0" />
4 dbcea781900e planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit f971832d2b34a182314e5201ea6895dd207c5923 rnateam parents: 3 diff changeset	198 <!--has_text text="1.2" />
dbcea781900e planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit f971832d2b34a182314e5201ea6895dd207c5923 rnateam parents: 3 diff changeset	199 <has_text text="1.1" /-->
3 a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	200 </assert_contents>
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	201 </element>
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	202 <element name="final_partition.hard.best" file="RESULTS/partitions/final_partition.hard.best" />
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	203 <element name="final_partition.hard.merged" file="RESULTS/partitions/final_partition.hard.merged" />
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	204 <element name="final_partition.soft" file="RESULTS/partitions/final_partition.soft" />
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	205 <element name="final_partition.used_cmsearch" file="RESULTS/partitions/final_partition.used_cmsearch" compare="contains"/>
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	206 </output_collection>
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	207 <output_collection name="topSecondaryStruct" type="list">
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	208 <element name="1.cluster.top5.alirna.png" file="1.cluster.top5.alirna.png" ftype="png" compare="sim_size" />
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	209 <element name="2.cluster.top5.alirna.png" file="2.cluster.top5.alirna.png" ftype="png" compare="sim_size" />
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	210 </output_collection>
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	211 <output_collection name="topDot" type="list">
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	212 <element name="1.cluster.top5.aln.png" file="1.cluster.top5.aln.png" ftype="png" compare="sim_size" />
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	213 <element name="2.cluster.top5.aln.png" file="2.cluster.top5.aln.png" ftype="png" compare="sim_size" />
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	214 </output_collection>
4 dbcea781900e planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit f971832d2b34a182314e5201ea6895dd207c5923 rnateam parents: 3 diff changeset	215
dbcea781900e planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit f971832d2b34a182314e5201ea6895dd207c5923 rnateam parents: 3 diff changeset	216 <output_collection name="rscapePlot" type="list">
dbcea781900e planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit f971832d2b34a182314e5201ea6895dd207c5923 rnateam parents: 3 diff changeset	217 <element name="1.cluster.top5.result.aln_1.R2R.sto.pdf" file="1.cluster.top5.result.aln_1.R2R.sto.pdf" ftype="pdf" compare="sim_size" />
dbcea781900e planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit f971832d2b34a182314e5201ea6895dd207c5923 rnateam parents: 3 diff changeset	218 <element name="2.cluster.top5.result.aln_1.R2R.sto.pdf" file="2.cluster.top5.result.aln_1.R2R.sto.pdf" ftype="pdf" compare="sim_size" />
dbcea781900e planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit f971832d2b34a182314e5201ea6895dd207c5923 rnateam parents: 3 diff changeset	219 </output_collection>
dbcea781900e planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit f971832d2b34a182314e5201ea6895dd207c5923 rnateam parents: 3 diff changeset	220
dbcea781900e planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit f971832d2b34a182314e5201ea6895dd207c5923 rnateam parents: 3 diff changeset	221 <output name="RESULTS_zip" file="RESULTS.zip" ftype="zip" compare="sim_size" delta="20000"/>
3 a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	222
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	223 </test>
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	224 </tests>
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	225 <help>
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	226 <![CDATA[
0 4503c49f31c4 planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 21aaee40723b5341b4236edeb0e72995c2054053 rnateam parents: diff changeset	227
4503c49f31c4 planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 21aaee40723b5341b4236edeb0e72995c2054053 rnateam parents: diff changeset	228 What it does
4503c49f31c4 planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 21aaee40723b5341b4236edeb0e72995c2054053 rnateam parents: diff changeset	229
4503c49f31c4 planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 21aaee40723b5341b4236edeb0e72995c2054053 rnateam parents: diff changeset	230 Post-processing. Redundant clusters are merged and instances that belong to multiple clusters
4503c49f31c4 planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 21aaee40723b5341b4236edeb0e72995c2054053 rnateam parents: diff changeset	231 are assigned unambiguously. For every pair of clusters, the relative overlap (i.e. the fraction of
4503c49f31c4 planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 21aaee40723b5341b4236edeb0e72995c2054053 rnateam parents: diff changeset	232 instances that occur in both clusters) is computed and clusters are merged if the overlap exceeds 50%.
4503c49f31c4 planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 21aaee40723b5341b4236edeb0e72995c2054053 rnateam parents: diff changeset	233 Cluster members are finally ranked by their CM bitscore.
4503c49f31c4 planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 21aaee40723b5341b4236edeb0e72995c2054053 rnateam parents: diff changeset	234
4503c49f31c4 planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 21aaee40723b5341b4236edeb0e72995c2054053 rnateam parents: diff changeset	235 ]]>
3 a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	236 </help>
a8fde40f00fc planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86 rnateam parents: 2 diff changeset	237 <citations>
10 a9965909555e planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/GraphClust/CollectResults commit 4406735e44aba20859c252be39f4e99df28c7a92 rnateam parents: 9 diff changeset	238 <citation type="doi">10.5281/zenodo.597695</citation>
0 4503c49f31c4 planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 21aaee40723b5341b4236edeb0e72995c2054053 rnateam parents: diff changeset	239 </citations>
4503c49f31c4 planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 21aaee40723b5341b4236edeb0e72995c2054053 rnateam parents: diff changeset	240 </tool>

Mercurial > repos > rnateam > graphclust_postprocessing

annotate glob_report.xml @ 10:a9965909555e draft default tip