Mercurial > repos > rnateam > graphclust_align_cluster

annotate test-data/alignment2.rnaz.out @ 0:99be6513e579 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
author rnateam
date Sat, 27 Oct 2018 13:12:06 -0400
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
99be6513e579 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
1
99be6513e579 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
2 ############################ RNAz 2.1 ##############################
99be6513e579 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
3
99be6513e579 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
4 Sequences: 5
99be6513e579 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
5 Columns: 70
99be6513e579 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
6 Reading direction: forward
99be6513e579 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
7 Mean pairwise identity: 99.43
99be6513e579 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
8 Shannon entropy: 0.01031
99be6513e579 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
9 G+C content: 0.49714
99be6513e579 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
10 Mean single sequence MFE: -14.75
99be6513e579 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
11 Consensus MFE: -14.41
99be6513e579 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
12 Energy contribution: -14.41
99be6513e579 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
13 Covariance contribution: 0.00
99be6513e579 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
14 Combinations/Pair: 1.00
99be6513e579 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
15 Mean z-score: -0.20
99be6513e579 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
16 Structure conservation index: 0.98
99be6513e579 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
17 Background model: dinucleotide
99be6513e579 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
18 Decision model: structural RNA alignment quality
99be6513e579 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
19 SVM decision value: -1.57
99be6513e579 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
20 SVM RNA-class probability: 0.014380
99be6513e579 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
21 Prediction: OTHER
99be6513e579 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
22
99be6513e579 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
23 ######################################################################
99be6513e579 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
24
99be6513e579 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
25 >SEQ4_526_595_+
99be6513e579 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
26 CUUUGUCCCUGACUGACUAUGCUUGUGGUUCUCCUCCAGUUGAUAGAGAAAAACAACCCAGCGAAGGCGC
99be6513e579 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
27 (((((((...((((((((((....))))).......))))))))))))............((....)).. ( -14.41, z-score = -0.08, R)
99be6513e579 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
28 >SEQ5_526_595_+
99be6513e579 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
29 CUUUGUCCCUGACUGACUAUGCUUGUGGUUCUCCUCCAGUUGAUAGAGAAAAACAACCCAGCGAAGGCGC
99be6513e579 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
30 (((((((...((((((((((....))))).......))))))))))))............((....)).. ( -14.41, z-score = -0.08, R)
99be6513e579 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
31 >SEQ16_526_595_+
99be6513e579 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
32 CUUUGUCCCUGACUGACUAUGCUUGUGGUUCUCCUCCAGUUGAUAGAGAAAAACAACCCAGCGAAGGCGC
99be6513e579 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
33 (((((((...((((((((((....))))).......))))))))))))............((....)).. ( -14.41, z-score = -0.08, R)
99be6513e579 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
34 >SEQ19_523_592_+
99be6513e579 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
35 CUUUGUCCCUGACUGACUAUGCUUGUGGUUCUCCUCCAGUUGAUAGAGAAAAACAACCCAGCGAAGGCGC
99be6513e579 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
36 (((((((...((((((((((....))))).......))))))))))))............((....)).. ( -14.41, z-score = -0.08, R)
99be6513e579 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
37 >SEQ14_529_598_+
99be6513e579 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
38 CUUUGUCCCUGACUGACUAUGCUUGUGGUUCUCCUUCAGUUGAUAGAGAAAAACAACCCAGCGAAGGCGC
99be6513e579 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
39 (((((((.((((..((((((....)))))).....))))..)))))))............((....)).. ( -16.10, z-score = -0.67, R)
99be6513e579 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
40 >consensus
99be6513e579 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
41 CUUUGUCCCUGACUGACUAUGCUUGUGGUUCUCCUCCAGUUGAUAGAGAAAAACAACCCAGCGAAGGCGC
99be6513e579 planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
rnateam
parents:
diff changeset
42 (((((((...((((((((((....))))).......))))))))))))............((....)).. (-14.41 = -14.41 + 0.00)