Mercurial > repos > rnateam > blockclust

comparison tool_dependencies.xml @ 1:f5600b583d85 draft

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Uploaded
author rnateam
date Mon, 21 Oct 2013 11:25:02 -0400
parents 91fb7edca344
children 0deb03bc35df
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0:91fb7edca344 1:f5600b583d85
11 </action> 11 </action>
12 <action type="move_file"> 12 <action type="move_file">
13 <source>BlockClustPipeLine.pl</source> 13 <source>BlockClustPipeLine.pl</source>
14 <destination>$INSTALL_DIR/bin</destination> 14 <destination>$INSTALL_DIR/bin</destination>
15 </action> 15 </action>
16 <action type="download_file">https://github.com/bgruening/download_store/raw/master/blockclust/blockclust-data-1.0.tar.gz</action> 16 <action type="move_file">
17 <action type="shell_command">tar xfvz blockclust-data-1.0.tar.gz -C $INSTALL_DIR/data/</action> 17 <source>blockclust.config</source>
18 <destination>$INSTALL_DIR/data/</destination>
19 </action>
20 <action type="download_file">https://github.com/bgruening/download_store/raw/master/blockclust/blockclust-data-1.0/annotations/dm3.tar.gz</action>
21 <action type="shell_command">tar -xfv dm3.tar.gz -C $INSTALL_DIR/data/annotations/</action>
22 <action type="download_file">https://github.com/bgruening/download_store/raw/master/blockclust/blockclust-data-1.0/annotations/hg19.tar.gz</action>
23 <action type="shell_command">tar -xfv hg19.tar.gz -C $INSTALL_DIR/data/annotations/</action>
24 <action type="download_file">https://github.com/bgruening/download_store/raw/master/blockclust/blockclust-data-1.0/annotations/mm10.tar.gz</action>
25 <action type="shell_command">tar -xfv mm10.tar.gz -C $INSTALL_DIR/data/annotations/</action>
26 <action type="download_file">https://github.com/bgruening/download_store/raw/master/blockclust/blockclust-data-1.0/annotations/panTro4.tar.gz</action>
27 <action type="shell_command">tar -xfv panTro4.tar.gz -C $INSTALL_DIR/data/annotations/</action>
28 <action type="download_file">https://github.com/bgruening/download_store/raw/master/blockclust/blockclust-data-1.0/annotations/rheMac3.tar.gz</action>
29 <action type="shell_command">tar -xfv rheMac3.tar.gz -C $INSTALL_DIR/data/annotations/</action>
18 <action type="set_environment"> 30 <action type="set_environment">
19 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> 31 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
20 <environment_variable name="BLOCKCLUST_DATA_PATH" action="prepend_to">$INSTALL_DIR/data</environment_variable> 32 <environment_variable name="BLOCKCLUST_DATA_PATH" action="prepend_to">$INSTALL_DIR/data</environment_variable>
21 </action> 33 </action>
22 </actions> 34 </actions>