--- a/rm_spurious_events.xml	Fri Oct 23 07:28:06 2015 -0400
+++ b/rm_spurious_events.xml	Wed Nov 04 07:18:06 2015 -0500
@@ -1,5 +1,5 @@
-<tool id="rm_spurious_events.py" name="rm_spurious_events.py" version="0.1.0">
-  <description>Remove spurious events.</description>
+<tool id="rm_spurious_events.py" name="Remove spurious" version="0.1.0">
+  <description>crosslinking events</description>
   <macros>
     <import>macros.xml</import>
   </macros>
@@ -32,17 +32,17 @@
   <help><![CDATA[
 Remove spurious events originating from errors in random sequence tags.
 
-This script compares all events sharing the same coordinates. Among each group
+This tool compares all events sharing the same coordinates. Among each group
 of events the maximum number of PCR duplicates is determined. All events that
 are supported by less than 10 percent of this maximum count are removed.
 
-Input:
-* bed6 file containing crosslinking events with score field set to number of PCR
-  duplicates
+Input::
+
+* bed6 file containing crosslinking events with score field set to number of PCR duplicates
 
-Output:
-* bed6 file with spurious crosslinking events removed, sorted by fields chrom,
-  start, stop, strand
+Output::
+
+* bed6 file with spurious crosslinking events removed, sorted by fields chrom, start, stop, strand
 
 Author: Daniel Maticzka
 Copyright: 2015