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comparison rm_spurious_events.xml @ 6:1bfc5a5de843 draft

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author rnateam
date Wed, 04 Nov 2015 07:18:06 -0500
parents bf5b606f1aa7
children 0b9aab6aaebf
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5:e841de88235c 6:1bfc5a5de843
1 <tool id="rm_spurious_events.py" name="rm_spurious_events.py" version="0.1.0"> 1 <tool id="rm_spurious_events.py" name="Remove spurious" version="0.1.0">
2 <description>Remove spurious events.</description> 2 <description>crosslinking events</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements" /> 6 <expand macro="requirements" />
7 <expand macro="stdio" /> 7 <expand macro="stdio" />
30 </test> 30 </test>
31 </tests> 31 </tests>
32 <help><![CDATA[ 32 <help><![CDATA[
33 Remove spurious events originating from errors in random sequence tags. 33 Remove spurious events originating from errors in random sequence tags.
34 34
35 This script compares all events sharing the same coordinates. Among each group 35 This tool compares all events sharing the same coordinates. Among each group
36 of events the maximum number of PCR duplicates is determined. All events that 36 of events the maximum number of PCR duplicates is determined. All events that
37 are supported by less than 10 percent of this maximum count are removed. 37 are supported by less than 10 percent of this maximum count are removed.
38 38
39 Input: 39 Input::
40 * bed6 file containing crosslinking events with score field set to number of PCR
41 duplicates
42 40
43 Output: 41 * bed6 file containing crosslinking events with score field set to number of PCR duplicates
44 * bed6 file with spurious crosslinking events removed, sorted by fields chrom, 42
45 start, stop, strand 43 Output::
44
45 * bed6 file with spurious crosslinking events removed, sorted by fields chrom, start, stop, strand
46 46
47 Author: Daniel Maticzka 47 Author: Daniel Maticzka
48 Copyright: 2015 48 Copyright: 2015
49 License: Apache 49 License: Apache
50 Email: maticzkd@informatik.uni-freiburg.de 50 Email: maticzkd@informatik.uni-freiburg.de