Mercurial > repos > rnateam > bctools
diff merge_pcr_duplicates.xml @ 50:0b9aab6aaebf draft
Uploaded 16cfcafe8b42055c5dd64e62c42b82b455027a40
author | rnateam |
---|---|
date | Tue, 26 Jan 2016 04:38:27 -0500 |
parents | b994884d5541 |
children | 5fa4568fc6b2 |
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--- a/merge_pcr_duplicates.xml Sat Dec 19 06:16:22 2015 -0500 +++ b/merge_pcr_duplicates.xml Tue Jan 26 04:38:27 2016 -0500 @@ -1,11 +1,15 @@ -<tool id="merge_pcr_duplicates.py" name="Merge PCR duplicates" version="0.1.0"> +<tool id="merge_pcr_duplicates.py" name="Merge PCR duplicates" version="0.2.0"> <description>according to random barcode library.</description> <macros> <import>macros.xml</import> </macros> <expand macro="requirements" /> <expand macro="stdio" /> - <version_command>python merge_pcr_duplicates.py --version</version_command> + <requirements> + <requirement type="package" version="4.1.0">gnu_awk</requirement> + <requirement type="package" version="8.22">gnu_coreutils</requirement> + </requirements> + <version_command>python $__tool_directory__/merge_pcr_duplicates.py --version</version_command> <command interpreter="python"><![CDATA[merge_pcr_duplicates.py #if $positional_1 and $positional_1 is not None: $positional_1 @@ -18,7 +22,7 @@ > $default]]></command> <inputs> <param area="false" label="bed6 file containing alignments." name="positional_1" type="data" format="bed"/> - <param area="false" label="fasta barcode library." name="positional_2" type="data" format="fastq"/> + <param area="false" label="fastaq barcode library." name="positional_2" type="data" format="fastq"/> </inputs> <outputs> <data format="bed" hidden="false" name="default"/>