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comparison merge_pcr_duplicates.xml @ 50:0b9aab6aaebf draft

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Uploaded 16cfcafe8b42055c5dd64e62c42b82b455027a40
author rnateam
date Tue, 26 Jan 2016 04:38:27 -0500
parents b994884d5541
children 5fa4568fc6b2
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49:303f6402a035 50:0b9aab6aaebf
1 <tool id="merge_pcr_duplicates.py" name="Merge PCR duplicates" version="0.1.0"> 1 <tool id="merge_pcr_duplicates.py" name="Merge PCR duplicates" version="0.2.0">
2 <description>according to random barcode library.</description> 2 <description>according to random barcode library.</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements" /> 6 <expand macro="requirements" />
7 <expand macro="stdio" /> 7 <expand macro="stdio" />
8 <version_command>python merge_pcr_duplicates.py --version</version_command> 8 <requirements>
9 <requirement type="package" version="4.1.0">gnu_awk</requirement>
10 <requirement type="package" version="8.22">gnu_coreutils</requirement>
11 </requirements>
12 <version_command>python $__tool_directory__/merge_pcr_duplicates.py --version</version_command>
9 <command interpreter="python"><![CDATA[merge_pcr_duplicates.py 13 <command interpreter="python"><![CDATA[merge_pcr_duplicates.py
10 #if $positional_1 and $positional_1 is not None: 14 #if $positional_1 and $positional_1 is not None:
11 $positional_1 15 $positional_1
12 #end if 16 #end if
13 17
16 #end if 20 #end if
17 21
18 > $default]]></command> 22 > $default]]></command>
19 <inputs> 23 <inputs>
20 <param area="false" label="bed6 file containing alignments." name="positional_1" type="data" format="bed"/> 24 <param area="false" label="bed6 file containing alignments." name="positional_1" type="data" format="bed"/>
21 <param area="false" label="fasta barcode library." name="positional_2" type="data" format="fastq"/> 25 <param area="false" label="fastaq barcode library." name="positional_2" type="data" format="fastq"/>
22 </inputs> 26 </inputs>
23 <outputs> 27 <outputs>
24 <data format="bed" hidden="false" name="default"/> 28 <data format="bed" hidden="false" name="default"/>
25 </outputs> 29 </outputs>
26 <tests> 30 <tests>