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comparison flexbar_dsc.xml @ 35:aff2c7260894 draft

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integrate dsc and package updates
author rnateam
date Fri, 18 Dec 2015 03:41:00 -0500
parents c53e1cc9ad35
children 8880f22382ae
comparison
equal deleted inserted replaced
34:5c46d375b837 35:aff2c7260894
419 <stdio> 419 <stdio>
420 <exit_code range="1:" level="fatal" description="Error!" /> 420 <exit_code range="1:" level="fatal" description="Error!" />
421 </stdio> 421 </stdio>
422 422
423 <outputs> 423 <outputs>
424 <data format="txt" name="output" metadata_source="reads"/>
425 <collection name="list_output" type="list:paired" label="Duplicate List"> 424 <collection name="list_output" type="list:paired" label="Duplicate List">
426 <!-- Use named regex group to grab pattern 425 <!-- Use named regex group to grab pattern
427 <identifier_0>_<identifier_1>.fq. Here identifier_0 is the list 426 <identifier_0>_<identifier_1>.fq. Here identifier_0 is the list
428 identifier in the nested collection and identifier_1 is either 427 identifier in the nested collection and identifier_1 is either
429 forward or reverse (for instance samp1_forward.fq). 428 forward or reverse (for instance samp1_forward.fq).
430 --> 429 -->
431 <discover_datasets pattern="FlexbarOutput_barcode_(?P&lt;identifier_0&gt;[^_]+)_(?P&lt;identifier_1&gt;[^_]+)\.fastq" metadata_source="reads" visible="true" /> 430 <data format="txt" name="output" metadata_source="reads"/>
431 <discover_datasets pattern="FlexbarOutput_(?P&lt;identifier_0&gt;[^_]+)_(?P&lt;identifier_1&gt;[^_]+)\.fastq" metadata_source="reads" visible="true" />
432 </collection> 432 </collection>
433 </outputs> 433 </outputs>
434 434
435 435
436 <help> 436 <help>