Mercurial > repos > recetox > recetox_aplcms_hybrid
changeset 8:f22b38b72ac8 draft
"planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/recetox_aplcms commit 7b649938402c30227d8252d63e89a72f2f6fb628"
| author | recetox |
|---|---|
| date | Thu, 19 Aug 2021 14:02:56 +0000 |
| parents | d1b2fafa8b79 |
| children | d62f052efae6 |
| files | recetox_aplcms_hybrid.xml recetox_aplcms_macros.xml |
| diffstat | 2 files changed, 8 insertions(+), 5 deletions(-) [+] |
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--- a/recetox_aplcms_hybrid.xml Mon Aug 09 15:29:46 2021 +0000 +++ b/recetox_aplcms_hybrid.xml Thu Aug 19 14:02:56 2021 +0000 @@ -1,16 +1,14 @@ -<tool id="recetox_aplcms_hybrid" name="apLCMS Hybrid" version="@TOOL_VERSION@+galaxy1"> +<tool id="recetox_aplcms_hybrid" name="RECETOX apLCMS Hybrid" version="@TOOL_VERSION@+galaxy1"> <description>generate a feature table from LC/MS spectra</description> <macros> <import>recetox_aplcms_macros.xml</import> </macros> - <expand macro="requirements" /> - <command detect_errors="aggressive"><![CDATA[ sh ${symlink_inputs} && Rscript -e 'source("${__tool_directory__}/main.R")' -e 'source("${run_script}")' ]]></command> - + <expand macro="creator" /> <configfiles> <configfile name="symlink_inputs"> #for $infile in $files
--- a/recetox_aplcms_macros.xml Mon Aug 09 15:29:46 2021 +0000 +++ b/recetox_aplcms_macros.xml Thu Aug 19 14:02:56 2021 +0000 @@ -1,6 +1,5 @@ <macros> <token name="@TOOL_VERSION@">0.9.3</token> - <xml name="requirements"> <requirements> <requirement type="package" version="4.1.0">r-base</requirement> @@ -9,6 +8,12 @@ </requirements> </xml> + <xml name="creator"> + <creator> + <organization url="https://www.recetox.muni.cz/" name="RECETOX MUNI" /> + </creator> + </xml> + <xml name="inputs"> <inputs> <param name="files" type="data" format="mzdata,mzml,mzxml,netcdf" multiple="true" min="3" label="data"