Mercurial > repos > recetox > ramclustr
diff ramclustr.xml @ 4:69e0da4703b5 draft
"planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit b514d9bf91b62bb06d39e6ceee21d8f18876e12b"
| author | recetox |
|---|---|
| date | Fri, 04 Feb 2022 08:31:26 +0000 |
| parents | 211cd88b5148 |
| children | 10ded21d47c0 |
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--- a/ramclustr.xml Fri Jan 28 16:25:33 2022 +0000 +++ b/ramclustr.xml Fri Feb 04 08:31:26 2022 +0000 @@ -1,4 +1,4 @@ -<tool id="ramclustr" name="RAMClustR" version="@TOOL_VERSION@+galaxy0"> +<tool id="ramclustr" name="RAMClustR" version="@TOOL_VERSION@+galaxy1"> <macros> <import>macros.xml</import> </macros> @@ -60,6 +60,9 @@ #if $filetype.metadata.batch_order_qc metadata_file = "${filetype.metadata.batch_order_qc}", #end if + #if $filetype.metadata.ExpDes + exp_design = "${filetype.metadata.ExpDes}" + #end if ), "$result", "$method_metadata", $filetype.required.merge_msp, "$spec_abundance") </configfile> @@ -96,9 +99,10 @@ <test><!-- TEST 1 --> <param name="type_choice" value="xcms"/> <param name="input_xcms" value="test1_xcmsObj_1.rdata.xcms.fillpeaks" ftype="rdata.xcms.fillpeaks"/> + <param name="ExpDes" value="lc-ramclustr-define-experiment.csv" ftype="csv"/> <output name="result" file="test1_ramclustObj_xcms_1.rdata" ftype="RData" compare="sim_size" delta="200"/> <output_collection name="mass_spectra" type="list"> - <element name="fill" file="test1_fill_xcms_1.msp" ftype="msp"/> + <element name="experiment_lc" file="test1_fill_xcms_1.msp" ftype="msp"/> </output_collection> <output name="method_metadata" file="test1_metadata_xcms_1.txt" ftype="txt"/> <output name="spec_abundance" file="test1_spec_abundance_xcms_1.csv" ftype="csv" compare="sim_size" delta="100"/>