Mercurial > repos > recetox > ramclustr

comparison ramclustr.xml @ 4:69e0da4703b5 draft

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"planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit b514d9bf91b62bb06d39e6ceee21d8f18876e12b"
author recetox
date Fri, 04 Feb 2022 08:31:26 +0000
parents 211cd88b5148
children 10ded21d47c0
comparison
equal deleted inserted replaced
3:211cd88b5148 4:69e0da4703b5
1 <tool id="ramclustr" name="RAMClustR" version="@TOOL_VERSION@+galaxy0"> 1 <tool id="ramclustr" name="RAMClustR" version="@TOOL_VERSION@+galaxy1">
2 <macros> 2 <macros>
3 <import>macros.xml</import> 3 <import>macros.xml</import>
4 </macros> 4 </macros>
5 <expand macro="creator"/> 5 <expand macro="creator"/>
6 6
58 fftempdir = $filetype.optional.fftempdir, 58 fftempdir = $filetype.optional.fftempdir,
59 #end if 59 #end if
60 #if $filetype.metadata.batch_order_qc 60 #if $filetype.metadata.batch_order_qc
61 metadata_file = "${filetype.metadata.batch_order_qc}", 61 metadata_file = "${filetype.metadata.batch_order_qc}",
62 #end if 62 #end if
63 #if $filetype.metadata.ExpDes
64 exp_design = "${filetype.metadata.ExpDes}"
65 #end if
63 ), 66 ),
64 "$result", "$method_metadata", $filetype.required.merge_msp, "$spec_abundance") 67 "$result", "$method_metadata", $filetype.required.merge_msp, "$spec_abundance")
65 </configfile> 68 </configfile>
66 </configfiles> 69 </configfiles>
67 <inputs> 70 <inputs>
94 97
95 <tests> 98 <tests>
96 <test><!-- TEST 1 --> 99 <test><!-- TEST 1 -->
97 <param name="type_choice" value="xcms"/> 100 <param name="type_choice" value="xcms"/>
98 <param name="input_xcms" value="test1_xcmsObj_1.rdata.xcms.fillpeaks" ftype="rdata.xcms.fillpeaks"/> 101 <param name="input_xcms" value="test1_xcmsObj_1.rdata.xcms.fillpeaks" ftype="rdata.xcms.fillpeaks"/>
102 <param name="ExpDes" value="lc-ramclustr-define-experiment.csv" ftype="csv"/>
99 <output name="result" file="test1_ramclustObj_xcms_1.rdata" ftype="RData" compare="sim_size" delta="200"/> 103 <output name="result" file="test1_ramclustObj_xcms_1.rdata" ftype="RData" compare="sim_size" delta="200"/>
100 <output_collection name="mass_spectra" type="list"> 104 <output_collection name="mass_spectra" type="list">
101 <element name="fill" file="test1_fill_xcms_1.msp" ftype="msp"/> 105 <element name="experiment_lc" file="test1_fill_xcms_1.msp" ftype="msp"/>
102 </output_collection> 106 </output_collection>
103 <output name="method_metadata" file="test1_metadata_xcms_1.txt" ftype="txt"/> 107 <output name="method_metadata" file="test1_metadata_xcms_1.txt" ftype="txt"/>
104 <output name="spec_abundance" file="test1_spec_abundance_xcms_1.csv" ftype="csv" compare="sim_size" delta="100"/> 108 <output name="spec_abundance" file="test1_spec_abundance_xcms_1.csv" ftype="csv" compare="sim_size" delta="100"/>
105 </test> 109 </test>
106 <test><!-- TEST 2 --> 110 <test><!-- TEST 2 -->