Mercurial > repos > recetox > query

changeset 1:55ca5d902f62 draft default tip

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"planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/query commit 9bc547872c98a9c13c561d15e8990fe82bdc0e72"
author recetox
date Fri, 28 Jan 2022 16:24:56 +0000
parents 0369de831b32
children
files macros.xml query.xml
diffstat 2 files changed, 38 insertions(+), 16 deletions(-) [+]
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/macros.xml	Fri Jan 28 16:24:56 2022 +0000
@@ -0,0 +1,32 @@
+<macros>
+    <token name="@TOOL_VERSION@">0.1</token>
+
+    <xml name="creator">
+        <creator>
+            <person
+                givenName="Jiří"
+                familyName="Novotný"
+                url="https://github.com/xtracko"
+                identifier="0000-0001-5449-3523" />
+            <organization
+                url="https://www.recetox.muni.cz/"
+                email="GalaxyToolsDevelopmentandDeployment@space.muni.cz"
+                name="RECETOX MUNI" />
+        </creator>
+    </xml>
+
+    <xml name="formats">
+        <option value="csv">csv</option>
+        <option value="tsv">tsv</option>
+        <option value="h5">h5</option>
+        <option value="feather">feather</option>
+        <option value="parquet">parquet</option>
+        <option value="sqlite">sqlite</option>
+    </xml>
+
+    <xml name="internal_name" token_format="">
+        <when value="@FORMAT@">
+            <param name="name" type="text" help="Specify the format's internal name of the table."/>
+        </when>
+    </xml>
+</macros>
--- a/query.xml	Wed Dec 09 02:04:20 2020 +0000
+++ b/query.xml	Fri Jan 28 16:24:56 2022 +0000
@@ -1,20 +1,8 @@
 <tool id="query" name="Query" version="@TOOL_VERSION@">
     <macros>
-        <token name="@TOOL_VERSION@">0.1</token>
-        <xml name="formats">
-            <option value="csv">csv</option>
-            <option value="tsv">tsv</option>
-            <option value="h5">h5</option>
-            <option value="feather">feather</option>
-            <option value="parquet">parquet</option>
-            <option value="sqlite">sqlite</option>
-        </xml>
-        <xml name="internal_name" token_format="">
-            <when value="@FORMAT@">
-                <param name="name" type="text" help="Specify the format's internal name of the table."/>
-            </when>
-        </xml>
+        <import>macros.xml</import>
     </macros>
+    <expand macro="creator"/>
 
     <requirements>
         <requirement type="package">click</requirement>
@@ -80,14 +68,16 @@
             </param>
             <param name="name" type="text" optional="true">
                 <label>Table name</label>
-                <help>Choose an unique name for the table which then you may use in the SQL Query. By default tables will be named as: t0, t1, ...</help>
+                <help>Choose an unique name for the table which then you may use in the SQL Query.
+                    By default tables will be named as: t0, t1, ...</help>
             </param>
         </repeat>
         <param name="query" type="text" area="true">
             <label>SQL Query</label>
             <help>
                 Type an arbitrary SQL SELECT to perform on the input tables. The input tables may be referred by their given names.
-                An example query is SELECT employees.name AS employee, emails.value AS email FROM one JOIN b ON employees.id = emails.employee, provided that the input tables are named employees and emails.
+                An example query is SELECT employees.name AS employee, emails.value AS email FROM one JOIN b ON employees.id = emails.employee,
+                provided that the input tables are named employees and emails.
             </help>
         </param>
         <conditional name="result">