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comparison query.xml @ 1:55ca5d902f62 draft default tip

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"planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/query commit 9bc547872c98a9c13c561d15e8990fe82bdc0e72"
author recetox
date Fri, 28 Jan 2022 16:24:56 +0000
parents 0369de831b32
children
comparison
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0:0369de831b32 1:55ca5d902f62
1 <tool id="query" name="Query" version="@TOOL_VERSION@"> 1 <tool id="query" name="Query" version="@TOOL_VERSION@">
2 <macros> 2 <macros>
3 <token name="@TOOL_VERSION@">0.1</token> 3 <import>macros.xml</import>
4 <xml name="formats">
5 <option value="csv">csv</option>
6 <option value="tsv">tsv</option>
7 <option value="h5">h5</option>
8 <option value="feather">feather</option>
9 <option value="parquet">parquet</option>
10 <option value="sqlite">sqlite</option>
11 </xml>
12 <xml name="internal_name" token_format="">
13 <when value="@FORMAT@">
14 <param name="name" type="text" help="Specify the format's internal name of the table."/>
15 </when>
16 </xml>
17 </macros> 4 </macros>
5 <expand macro="creator"/>
18 6
19 <requirements> 7 <requirements>
20 <requirement type="package">click</requirement> 8 <requirement type="package">click</requirement>
21 <requirement type="package">pyarrow</requirement> 9 <requirement type="package">pyarrow</requirement>
22 <requirement type="package">pytables</requirement> 10 <requirement type="package">pytables</requirement>
78 <help>Force a particular file format to get around formats unknown to Galaxy, ie. Parquet.</help> 66 <help>Force a particular file format to get around formats unknown to Galaxy, ie. Parquet.</help>
79 <expand macro="formats"/> 67 <expand macro="formats"/>
80 </param> 68 </param>
81 <param name="name" type="text" optional="true"> 69 <param name="name" type="text" optional="true">
82 <label>Table name</label> 70 <label>Table name</label>
83 <help>Choose an unique name for the table which then you may use in the SQL Query. By default tables will be named as: t0, t1, ...</help> 71 <help>Choose an unique name for the table which then you may use in the SQL Query.
72 By default tables will be named as: t0, t1, ...</help>
84 </param> 73 </param>
85 </repeat> 74 </repeat>
86 <param name="query" type="text" area="true"> 75 <param name="query" type="text" area="true">
87 <label>SQL Query</label> 76 <label>SQL Query</label>
88 <help> 77 <help>
89 Type an arbitrary SQL SELECT to perform on the input tables. The input tables may be referred by their given names. 78 Type an arbitrary SQL SELECT to perform on the input tables. The input tables may be referred by their given names.
90 An example query is SELECT employees.name AS employee, emails.value AS email FROM one JOIN b ON employees.id = emails.employee, provided that the input tables are named employees and emails. 79 An example query is SELECT employees.name AS employee, emails.value AS email FROM one JOIN b ON employees.id = emails.employee,
80 provided that the input tables are named employees and emails.
91 </help> 81 </help>
92 </param> 82 </param>
93 <conditional name="result"> 83 <conditional name="result">
94 <param name="format" type="select"> 84 <param name="format" type="select">
95 <label>SQL Query</label> 85 <label>SQL Query</label>