Mercurial > repos > recetox > mzml_validator

annotate schemas/mzML1.1.0.xsd @ 0:5961146e0d1a draft default tip

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planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
author recetox
date Fri, 20 Jan 2023 12:41:59 +0000
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5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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1 <?xml version="1.0" encoding="Windows-1252"?>
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2 <!-- Created with Liquid XML Studio 1.0.8.0 (http://www.liquid-technologies.com) -->
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3 <xs:schema xmlns:dx="http://psi.hupo.org/ms/mzml" attributeFormDefault="unqualified" elementFormDefault="qualified" targetNamespace="http://psi.hupo.org/ms/mzml" version="1.1.0" xmlns:xs="http://www.w3.org/2001/XMLSchema">
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4 <xs:complexType name="mzMLType">
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5 <xs:annotation>
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6 <xs:documentation>This is the root element for the Proteomics Standards Initiative (PSI) mzML schema, which is intended to capture the use of a mass spectrometer, the data generated, and the initial processing of that data (to the level of the peak list).</xs:documentation>
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7 </xs:annotation>
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8 <xs:sequence>
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9 <xs:element name="cvList" type="dx:CVListType" />
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10 <xs:element name="fileDescription" type="dx:FileDescriptionType" />
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11 <xs:element minOccurs="0" name="referenceableParamGroupList" type="dx:ReferenceableParamGroupListType" />
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12 <xs:element minOccurs="0" name="sampleList" type="dx:SampleListType" />
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13 <xs:element name="softwareList" type="dx:SoftwareListType" />
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14 <xs:element minOccurs="0" name="scanSettingsList" type="dx:ScanSettingsListType" />
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15 <xs:element name="instrumentConfigurationList" type="dx:InstrumentConfigurationListType" />
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16 <xs:element name="dataProcessingList" type="dx:DataProcessingListType" />
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17 <xs:element name="run" type="dx:RunType" />
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18 </xs:sequence>
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19 <xs:attribute name="accession" type="xs:string" use="optional">
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20 <xs:annotation>
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21 <xs:documentation>An optional accession number for the mzML document used for storage, e.g. in PRIDE.</xs:documentation>
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22 </xs:annotation>
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23 </xs:attribute>
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24 <xs:attribute name="version" type="xs:string" use="required">
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25 <xs:annotation>
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26 <xs:documentation>The version of this mzML document.</xs:documentation>
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27 </xs:annotation>
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28 </xs:attribute>
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29 <xs:attribute name="id" type="xs:string" use="optional">
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30 <xs:annotation>
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31 <xs:documentation>An optional id for the mzML document used for referencing from external files. It is recommended to use LSIDs when possible.</xs:documentation>
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32 </xs:annotation>
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33 </xs:attribute>
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34 </xs:complexType>
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35 <xs:complexType name="FileDescriptionType">
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36 <xs:annotation>
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37 <xs:documentation>Information pertaining to the entire mzML file (i.e. not specific to any part of the data set) is stored here.</xs:documentation>
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38 </xs:annotation>
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39 <xs:sequence>
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40 <xs:element name="fileContent" type="dx:ParamGroupType">
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41 <xs:annotation>
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42 <xs:documentation>This summarizes the different types of spectra that can be expected in the file. This is expected to aid processing software in skipping files that do not contain appropriate spectrum types for it. It should also describe the nativeID format used in the file by referring to an appropriate CV term.</xs:documentation>
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43 </xs:annotation>
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44 </xs:element>
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45 <xs:element minOccurs="0" name="sourceFileList" type="dx:SourceFileListType" />
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46 <xs:element minOccurs="0" maxOccurs="unbounded" name="contact" type="dx:ParamGroupType" />
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47 </xs:sequence>
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48 </xs:complexType>
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49 <xs:complexType name="SourceFileListType">
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50 <xs:annotation>
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51 <xs:documentation>List and descriptions of the source files this mzML document was generated or derived from</xs:documentation>
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52 </xs:annotation>
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53 <xs:sequence>
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54 <xs:element minOccurs="1" maxOccurs="unbounded" name="sourceFile" type="dx:SourceFileType" />
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55 </xs:sequence>
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56 <xs:attribute name="count" type="xs:nonNegativeInteger" use="required">
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57 <xs:annotation>
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58 <xs:documentation>Number of source files used in generating the instance document.</xs:documentation>
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59 </xs:annotation>
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60 </xs:attribute>
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61 </xs:complexType>
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62 <xs:complexType name="SourceFileType">
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63 <xs:annotation>
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64 <xs:documentation>Description of the source file, including location and type.</xs:documentation>
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65 </xs:annotation>
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66 <xs:complexContent mixed="false">
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67 <xs:extension base="dx:ParamGroupType">
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68 <xs:attribute name="id" type="xs:ID" use="required">
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69 <xs:annotation>
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70 <xs:documentation>An identifier for this file.</xs:documentation>
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71 </xs:annotation>
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72 </xs:attribute>
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73 <xs:attribute name="name" type="xs:string" use="required">
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74 <xs:annotation>
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75 <xs:documentation>Name of the source file, without reference to location (either URI or local path).</xs:documentation>
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76 </xs:annotation>
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77 </xs:attribute>
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78 <xs:attribute name="location" type="xs:anyURI" use="required">
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79 <xs:annotation>
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80 <xs:documentation>URI-formatted location where the file was retrieved.</xs:documentation>
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81 </xs:annotation>
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82 </xs:attribute>
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83 </xs:extension>
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84 </xs:complexContent>
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85 </xs:complexType>
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86 <xs:complexType name="CVType">
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87 <xs:annotation>
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88 <xs:documentation>Information about an ontology or CV source and a short 'lookup' tag to refer to.</xs:documentation>
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89 </xs:annotation>
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90 <xs:attribute name="id" type="xs:ID" use="required">
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91 <xs:annotation>
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92 <xs:documentation>The short label to be used as a reference tag with which to refer to this particular Controlled Vocabulary source description (e.g., from the cvLabel attribute, in CVParamType elements).</xs:documentation>
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93 </xs:annotation>
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94 </xs:attribute>
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95 <xs:attribute name="fullName" type="xs:string" use="required">
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96 <xs:annotation>
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97 <xs:documentation>The usual name for the resource (e.g. The PSI-MS Controlled Vocabulary).</xs:documentation>
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98 </xs:annotation>
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99 </xs:attribute>
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100 <xs:attribute name="version" type="xs:string" use="optional">
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101 <xs:annotation>
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102 <xs:documentation>The version of the CV from which the referred-to terms are drawn.</xs:documentation>
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103 </xs:annotation>
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104 </xs:attribute>
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105 <xs:attribute name="URI" type="xs:anyURI" use="required">
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106 <xs:annotation>
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107 <xs:documentation>The URI for the resource.</xs:documentation>
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108 </xs:annotation>
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109 </xs:attribute>
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110 </xs:complexType>
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111 <xs:complexType name="CVListType">
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112 <xs:annotation>
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113 <xs:documentation>Container for one or more controlled vocabulary definitions.</xs:documentation>
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114 </xs:annotation>
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115 <xs:sequence>
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116 <xs:element maxOccurs="unbounded" name="cv" type="dx:CVType" />
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117 </xs:sequence>
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118 <xs:attribute name="count" type="xs:nonNegativeInteger" use="required">
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119 <xs:annotation>
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120 <xs:documentation>The number of CV definitionsin this mzML file.</xs:documentation>
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121 </xs:annotation>
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122 </xs:attribute>
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123 </xs:complexType>
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124 <xs:complexType name="ReferenceableParamGroupListType">
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125 <xs:annotation>
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126 <xs:documentation>Container for a list of referenceableParamGroups</xs:documentation>
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127 </xs:annotation>
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128 <xs:sequence>
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129 <xs:element maxOccurs="unbounded" name="referenceableParamGroup" type="dx:ReferenceableParamGroupType" />
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130 </xs:sequence>
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131 <xs:attribute name="count" type="xs:nonNegativeInteger" use="required">
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132 <xs:annotation>
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133 <xs:documentation>The number of ParamGroups defined in this mzML file.</xs:documentation>
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134 </xs:annotation>
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135 </xs:attribute>
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136 </xs:complexType>
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137 <xs:complexType name="ParamGroupType">
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138 <xs:annotation>
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139 <xs:documentation>Structure allowing the use of a controlled (cvParam) or uncontrolled vocabulary (userParam), or a reference to a predefined set of these in this mzML file (paramGroupRef).</xs:documentation>
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140 </xs:annotation>
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141 <xs:sequence>
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142 <xs:element minOccurs="0" maxOccurs="unbounded" name="referenceableParamGroupRef" type="dx:ReferenceableParamGroupRefType" />
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143 <xs:element minOccurs="0" maxOccurs="unbounded" name="cvParam" type="dx:CVParamType" />
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144 <xs:element minOccurs="0" maxOccurs="unbounded" name="userParam" type="dx:UserParamType" />
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145 </xs:sequence>
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146 </xs:complexType>
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147 <xs:complexType name="ReferenceableParamGroupType">
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148 <xs:annotation>
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149 <xs:documentation>A collection of CVParam and UserParam elements that can be referenced from elsewhere in this mzML document by using the 'paramGroupRef' element in that location to reference the 'id' attribute value of this element.</xs:documentation>
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150 </xs:annotation>
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151 <xs:sequence>
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152 <xs:element minOccurs="0" maxOccurs="unbounded" name="cvParam" type="dx:CVParamType" />
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153 <xs:element minOccurs="0" maxOccurs="unbounded" name="userParam" type="dx:UserParamType" />
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154 </xs:sequence>
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155 <xs:attribute name="id" type="xs:ID" use="required">
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156 <xs:annotation>
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157 <xs:documentation>The identifier with which to reference this ReferenceableParamGroup.</xs:documentation>
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158 </xs:annotation>
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159 </xs:attribute>
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160 </xs:complexType>
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161 <xs:complexType name="CVParamType">
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162 <xs:annotation>
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163 <xs:documentation>This element holds additional data or annotation. Only controlled values are allowed here.</xs:documentation>
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164 </xs:annotation>
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165 <xs:attribute name="cvRef" type="xs:IDREF" use="required">
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166 <xs:annotation>
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167 <xs:documentation>A reference to the CV 'id' attribute as defined in the cvList in this mzML file.</xs:documentation>
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168 </xs:annotation>
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169 </xs:attribute>
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170 <xs:attribute name="accession" type="xs:string" use="required">
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171 <xs:annotation>
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172 <xs:documentation>The accession number of the referred-to term in the named resource (e.g.: MS:000012).</xs:documentation>
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173 </xs:annotation>
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174 </xs:attribute>
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175 <xs:attribute name="value" type="xs:string" use="optional">
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176 <xs:annotation>
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177 <xs:documentation>The value for the parameter; may be absent if not appropriate, or a numeric or symbolic value, or may itself be CV (legal values for a parameter should be enumerated and defined in the ontology).</xs:documentation>
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178 </xs:annotation>
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179 </xs:attribute>
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180 <xs:attribute name="name" type="xs:string" use="required">
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181 <xs:annotation>
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182 <xs:documentation>The actual name for the parameter, from the referred-to controlled vocabulary. This should be the preferred name associated with the specified accession number.</xs:documentation>
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183 </xs:annotation>
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184 </xs:attribute>
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185 <xs:attribute name="unitAccession" type="xs:string" use="optional">
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186 <xs:annotation>
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187 <xs:documentation>An optional CV accession number for the unit term associated with the value, if any (e.g., 'UO:0000266' for 'electron volt').</xs:documentation>
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188 </xs:annotation>
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189 </xs:attribute>
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190 <xs:attribute name="unitName" type="xs:string" use="optional">
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191 <xs:annotation>
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192 <xs:documentation>An optional CV name for the unit accession number, if any (e.g., 'electron volt' for 'UO:0000266' ).</xs:documentation>
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193 </xs:annotation>
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194 </xs:attribute>
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195 <xs:attribute name="unitCvRef" type="xs:IDREF" use="optional">
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196 <xs:annotation>
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197 <xs:documentation>If a unit term is referenced, this attribute must refer to the CV 'id' attribute defined in the cvList in this mzML file.</xs:documentation>
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198 </xs:annotation>
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199 </xs:attribute>
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200 </xs:complexType>
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201 <xs:complexType name="UserParamType">
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202 <xs:annotation>
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203 <xs:documentation>Uncontrolled user parameters (essentially allowing free text). Before using these, one should verify whether there is an appropriate CV term available, and if so, use the CV term instead</xs:documentation>
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204 </xs:annotation>
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205 <xs:attribute name="name" type="xs:string" use="required">
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206 <xs:annotation>
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207 <xs:documentation>The name for the parameter.</xs:documentation>
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208 </xs:annotation>
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209 </xs:attribute>
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210 <xs:attribute name="type" type="xs:string" use="optional">
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211 <xs:annotation>
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212 <xs:documentation>The datatype of the parameter, where appropriate (e.g.: xsd:float).</xs:documentation>
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213 </xs:annotation>
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214 </xs:attribute>
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215 <xs:attribute name="value" type="xs:string" use="optional">
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216 <xs:annotation>
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217 <xs:documentation>The value for the parameter, where appropriate.</xs:documentation>
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218 </xs:annotation>
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219 </xs:attribute>
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220 <xs:attribute name="unitAccession" type="xs:string" use="optional">
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221 <xs:annotation>
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222 <xs:documentation>An optional CV accession number for the unit term associated with the value, if any (e.g., 'UO:0000266' for 'electron volt').</xs:documentation>
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223 </xs:annotation>
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224 </xs:attribute>
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225 <xs:attribute name="unitName" type="xs:string" use="optional">
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226 <xs:annotation>
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227 <xs:documentation>An optional CV name for the unit accession number, if any (e.g., 'electron volt' for 'UO:0000266' ).</xs:documentation>
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228 </xs:annotation>
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229 </xs:attribute>
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230 <xs:attribute name="unitCvRef" type="xs:IDREF" use="optional">
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231 <xs:annotation>
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232 <xs:documentation>If a unit term is referenced, this attribute must refer to the CV 'id' attribute defined in the cvList in this mzML file.</xs:documentation>
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233 </xs:annotation>
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234 </xs:attribute>
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235 </xs:complexType>
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236 <xs:complexType name="ReferenceableParamGroupRefType">
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237 <xs:annotation>
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238 <xs:documentation>A reference to a previously defined ParamGroup, which is a reusable container of one or more cvParams.</xs:documentation>
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239 </xs:annotation>
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240 <xs:attribute name="ref" type="xs:IDREF" use="required">
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241 <xs:annotation>
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242 <xs:documentation>Reference to the id attribute in a referenceableParamGroup.</xs:documentation>
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243 </xs:annotation>
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244 </xs:attribute>
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245 </xs:complexType>
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246 <xs:complexType name="SampleListType">
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247 <xs:annotation>
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248 <xs:documentation>List and descriptions of samples.</xs:documentation>
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249 </xs:annotation>
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250 <xs:sequence>
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251 <xs:element maxOccurs="unbounded" name="sample" type="dx:SampleType" />
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252 </xs:sequence>
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253 <xs:attribute name="count" type="xs:nonNegativeInteger" use="required">
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254 <xs:annotation>
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255 <xs:documentation>The number of Samples defined in this mzML file.</xs:documentation>
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256 </xs:annotation>
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257 </xs:attribute>
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258 </xs:complexType>
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259 <xs:complexType name="SampleType">
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260 <xs:annotation>
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261 <xs:documentation>Expansible description of the sample used to generate the dataset, named in sampleName.</xs:documentation>
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262 </xs:annotation>
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263 <xs:complexContent mixed="false">
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264 <xs:extension base="dx:ParamGroupType">
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265 <xs:attribute name="id" type="xs:ID" use="required">
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266 <xs:annotation>
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267 <xs:documentation>A unique identifier across the samples with which to reference this sample description.</xs:documentation>
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268 </xs:annotation>
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269 </xs:attribute>
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270 <xs:attribute name="name" type="xs:string" use="optional">
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271 <xs:annotation>
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272 <xs:documentation>An optional name for the sample description, mostly intended as a quick mnemonic.</xs:documentation>
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273 </xs:annotation>
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274 </xs:attribute>
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275 </xs:extension>
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276 </xs:complexContent>
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277 </xs:complexType>
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278 <xs:complexType name="InstrumentConfigurationListType">
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279 <xs:annotation>
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280 <xs:documentation>List and descriptions of instrument configurations. At least one instrument configuration must be specified, even if it is only to specify that the instrument is unknown. In that case, the "instrument model" term is used to indicate the unknown instrument in the instrumentConfiguration.</xs:documentation>
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281 </xs:annotation>
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282 <xs:sequence>
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283 <xs:element maxOccurs="unbounded" name="instrumentConfiguration" type="dx:InstrumentConfigurationType" />
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284 </xs:sequence>
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285 <xs:attribute name="count" type="xs:nonNegativeInteger" use="required">
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286 <xs:annotation>
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287 <xs:documentation>The number of instrument configurations present in this list.</xs:documentation>
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288 </xs:annotation>
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289 </xs:attribute>
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290 </xs:complexType>
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291 <xs:complexType name="ComponentType">
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292 <xs:complexContent mixed="false">
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293 <xs:extension base="dx:ParamGroupType">
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294 <xs:attribute name="order" type="xs:int" use="required">
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295 <xs:annotation>
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296 <xs:documentation>This attribute must be used to indicate the order in which the components are encountered from source to detector (e.g., in a Q-TOF, the quadrupole would have the lower order number, and the TOF the higher number of the two).</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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297 </xs:annotation>
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298 </xs:attribute>
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299 </xs:extension>
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300 </xs:complexContent>
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301 </xs:complexType>
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302 <xs:complexType name="SourceComponentType" mixed="false">
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303 <xs:annotation>
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304 <xs:documentation>This element must be used to describe a Source Component Type. This is a PRIDE3-specific
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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305 modification of the core MzML schema that does not have any impact on the base schema validation.
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306 </xs:documentation>
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307 </xs:annotation>
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308 <xs:complexContent mixed="false">
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309 <xs:extension base="dx:ComponentType" />
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310 </xs:complexContent>
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311 </xs:complexType>
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312 <xs:complexType name="DetectorComponentType" mixed="false">
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313 <xs:annotation>
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314 <xs:documentation>This element must be used to describe a Detector Component Type. This is a PRIDE3-specific
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315 modification of the core MzML schema that does not have any impact on the base schema validation.
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316 </xs:documentation>
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317 </xs:annotation>
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318 <xs:complexContent mixed="false">
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319 <xs:extension base="dx:ComponentType" />
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320 </xs:complexContent>
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321 </xs:complexType>
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322 <xs:complexType name="AnalyzerComponentType" mixed="false">
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323 <xs:annotation>
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324 <xs:documentation>This element must be used to describe an Analyzer Component Type. This is a
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325 PRIDE3-specific
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326 modification of the core MzML schema that does not have any impact on the base schema validation.
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327 </xs:documentation>
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328 </xs:annotation>
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329 <xs:complexContent mixed="false">
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330 <xs:extension base="dx:ComponentType" />
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331 </xs:complexContent>
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332 </xs:complexType>
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333 <xs:complexType name="ComponentListType">
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334 <xs:annotation>
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335 <xs:documentation>List with the different components used in the mass spectrometer. At least one source, one mass analyzer and one detector need to be specified.</xs:documentation>
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336 </xs:annotation>
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337 <xs:sequence>
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338 <xs:element maxOccurs="unbounded" name="source" type="dx:SourceComponentType">
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339 <xs:annotation>
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340 <xs:documentation>A source component.</xs:documentation>
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341 </xs:annotation>
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342 </xs:element>
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343 <xs:element maxOccurs="unbounded" name="analyzer" type="dx:AnalyzerComponentType">
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344 <xs:annotation>
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345 <xs:documentation>A mass analyzer (or mass filter) component.</xs:documentation>
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346 </xs:annotation>
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347 </xs:element>
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348 <xs:element maxOccurs="unbounded" name="detector" type="dx:DetectorComponentType">
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349 <xs:annotation>
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350 <xs:documentation>A detector component.</xs:documentation>
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351 </xs:annotation>
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352 </xs:element>
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353 </xs:sequence>
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354 <xs:attribute name="count" type="xs:nonNegativeInteger" use="required">
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355 <xs:annotation>
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356 <xs:documentation>The number of components in this list.</xs:documentation>
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357 </xs:annotation>
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358 </xs:attribute>
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359 </xs:complexType>
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360 <xs:complexType name="InstrumentConfigurationType">
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361 <xs:annotation>
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362 <xs:documentation>Description of a particular hardware configuration of a mass spectrometer. Each configuration must have one (and only one) of the three different components used for an analysis. For hybrid instruments, such as an LTQ-FT, there must be one configuration for each permutation of the components that is used in the document. For software configuration, use a ReferenceableParamGroup element.</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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363 </xs:annotation>
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364 <xs:complexContent mixed="false">
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365 <xs:extension base="dx:ParamGroupType">
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366 <xs:sequence>
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367 <xs:element minOccurs="0" name="componentList" type="dx:ComponentListType" />
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368 <xs:element minOccurs="0" name="softwareRef" type="dx:SoftwareRefType" />
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369 </xs:sequence>
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370 <xs:attribute name="id" type="xs:ID" use="required">
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371 <xs:annotation>
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372 <xs:documentation>An identifier for this instrument configuration.</xs:documentation>
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373 </xs:annotation>
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374 </xs:attribute>
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375 <xs:attribute name="scanSettingsRef" type="xs:IDREF" />
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376 </xs:extension>
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377 </xs:complexContent>
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378 </xs:complexType>
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379 <xs:complexType name="SoftwareRefType">
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380 <xs:annotation>
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381 <xs:documentation>Reference to a previously defined software element</xs:documentation>
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382 </xs:annotation>
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383 <xs:attribute name="ref" type="xs:IDREF" use="required">
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384 <xs:annotation>
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385 <xs:documentation>This attribute must be used to reference the 'id' attribute of a software element.</xs:documentation>
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386 </xs:annotation>
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387 </xs:attribute>
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388 </xs:complexType>
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389 <xs:complexType name="SoftwareListType">
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390 <xs:annotation>
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391 <xs:documentation>List and descriptions of software used to acquire and/or process the data in this mzML file.</xs:documentation>
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392 </xs:annotation>
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393 <xs:sequence>
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394 <xs:element maxOccurs="unbounded" name="software" type="dx:SoftwareType">
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395 <xs:annotation>
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396 <xs:documentation>A piece of software.</xs:documentation>
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397 </xs:annotation>
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398 </xs:element>
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399 </xs:sequence>
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400 <xs:attribute name="count" type="xs:nonNegativeInteger" use="required">
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401 <xs:annotation>
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402 <xs:documentation>The number of softwares defined in this mzML file.</xs:documentation>
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403 </xs:annotation>
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404 </xs:attribute>
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405 </xs:complexType>
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406 <xs:complexType name="SoftwareType">
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407 <xs:annotation>
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408 <xs:documentation>Software information.</xs:documentation>
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409 </xs:annotation>
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410 <xs:complexContent mixed="false">
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411 <xs:extension base="dx:ParamGroupType">
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412 <xs:attribute name="id" type="xs:ID" use="required">
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413 <xs:annotation>
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414 <xs:documentation>An identifier for this software that is unique across all SoftwareTypes.</xs:documentation>
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415 </xs:annotation>
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416 </xs:attribute>
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417 <xs:attribute name="version" type="xs:string" use="required">
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418 <xs:annotation>
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419 <xs:documentation>The software version.</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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parents:
diff changeset
420 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
421 </xs:attribute>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
422 </xs:extension>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
423 </xs:complexContent>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
424 </xs:complexType>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
425 <xs:complexType name="DataProcessingListType">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
426 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
427 <xs:documentation>List and descriptions of data processing applied to this data.</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
428 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
429 <xs:sequence>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
430 <xs:element maxOccurs="unbounded" name="dataProcessing" type="dx:DataProcessingType" />
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
431 </xs:sequence>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
432 <xs:attribute name="count" type="xs:nonNegativeInteger" use="required">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
433 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
434 <xs:documentation>The number of DataProcessingTypes in this mzML file.</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
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diff changeset
435 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
436 </xs:attribute>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
437 </xs:complexType>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
438 <xs:complexType name="DataProcessingType">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
439 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
440 <xs:documentation>Description of the way in which a particular software was used.</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
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diff changeset
441 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
442 <xs:sequence>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
443 <xs:element maxOccurs="unbounded" name="processingMethod" type="dx:ProcessingMethodType">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
444 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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445 <xs:documentation>Description of the default peak processing method. This element describes the base method used in the generation of a particular mzML file. Variable methods should be described in the appropriate acquisition section - if no acquisition-specific details are found, then this information serves as the default.</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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parents:
diff changeset
446 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
447 </xs:element>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
448 </xs:sequence>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
449 <xs:attribute name="id" type="xs:ID" use="required">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
450 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
451 <xs:documentation>A unique identifier for this data processing that is unique across all DataProcessingTypes.</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
452 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
453 </xs:attribute>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
454 </xs:complexType>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
455 <xs:complexType name="ProcessingMethodType">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
456 <xs:complexContent mixed="false">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
457 <xs:extension base="dx:ParamGroupType">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
458 <xs:attribute name="order" type="xs:nonNegativeInteger" use="required">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
459 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
460 <xs:documentation>This attributes allows a series of consecutive steps to be placed in the correct order.</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
461 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
462 </xs:attribute>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
463 <xs:attribute name="softwareRef" type="xs:IDREF" use="required">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
464 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
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465 <xs:documentation>This attribute must reference the 'id' of the appropriate SoftwareType.</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
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diff changeset
466 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
467 </xs:attribute>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
468 </xs:extension>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
469 </xs:complexContent>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
470 </xs:complexType>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
471 <xs:complexType name="ScanSettingsListType">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
472 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
473 <xs:documentation>List with the descriptions of the acquisition settings applied prior to the start of data acquisition.</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
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diff changeset
474 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
475 <xs:sequence>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
476 <xs:element maxOccurs="unbounded" name="scanSettings" type="dx:ScanSettingsType" />
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
477 </xs:sequence>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
478 <xs:attribute name="count" type="xs:nonNegativeInteger" use="required">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
479 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
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480 <xs:documentation>The number of AcquisitionType elements in this list.</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
481 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
482 </xs:attribute>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
483 </xs:complexType>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
484 <xs:complexType name="ScanSettingsType">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
485 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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parents:
diff changeset
486 <xs:documentation>Description of the acquisition settings of the instrument prior to the start of the run.</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
487 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
488 <xs:complexContent mixed="false">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
489 <xs:extension base="dx:ParamGroupType">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
490 <xs:sequence>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
491 <xs:element minOccurs="0" maxOccurs="1" name="sourceFileRefList" type="dx:SourceFileRefListType">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
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diff changeset
492 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
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493 <xs:documentation>List with the source files containing the acquisition settings.</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
494 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
495 </xs:element>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
496 <xs:element minOccurs="0" maxOccurs="1" name="targetList" type="dx:TargetListType">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
497 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
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498 <xs:documentation>Target list (or 'inclusion list') configured prior to the run.</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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parents:
diff changeset
499 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
500 </xs:element>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
501 </xs:sequence>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
502 <xs:attribute name="id" type="xs:ID" use="required">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
503 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
504 <xs:documentation>A unique identifier for this acquisition setting.</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
505 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
506 </xs:attribute>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
507 </xs:extension>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
508 </xs:complexContent>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
509 </xs:complexType>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
510 <xs:complexType name="TargetListType">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
511 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
512 <xs:documentation>Target list (or 'inclusion list') configured prior to the run.</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
513 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
514 <xs:sequence>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
515 <xs:element minOccurs="1" maxOccurs="unbounded" name="target" type="dx:ParamGroupType" />
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
516 </xs:sequence>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
517 <xs:attribute name="count" type="xs:nonNegativeInteger" use="required">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
518 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
519 <xs:documentation>The number of TargetType elements in this list.</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
520 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
521 </xs:attribute>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
522 </xs:complexType>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
523 <xs:complexType name="RunType">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
524 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
525 <xs:documentation>A run in mzML should correspond to a single, consecutive and coherent set of scans on an instrument.</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
526 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
527 <xs:complexContent mixed="false">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
528 <xs:extension base="dx:ParamGroupType">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
529 <xs:sequence>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
530 <xs:element minOccurs="0" name="spectrumList" type="dx:SpectrumListType">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
531 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
532 <xs:documentation>All mass spectra and the acquisitions underlying them are described and attached here. Subsidiary data arrays are also both described and attached here.</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
533 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
534 </xs:element>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
535 <xs:element minOccurs="0" maxOccurs="1" name="chromatogramList" type="dx:ChromatogramListType">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
536 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
537 <xs:documentation>All chromatograms for this run.</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
538 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
539 </xs:element>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
540 </xs:sequence>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
541 <xs:attribute name="id" type="xs:ID" use="required">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
542 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
543 <xs:documentation>A unique identifier for this run.</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
544 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
545 </xs:attribute>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
546 <xs:attribute name="defaultInstrumentConfigurationRef" type="xs:IDREF" use="required">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
547 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
548 <xs:documentation>This attribute must reference the 'id' of the default instrument configuration. If a scan does not reference an instrument configuration, it implicitly refers to this configuration.</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
549 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
550 </xs:attribute>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
551 <xs:attribute name="defaultSourceFileRef" type="xs:IDREF" use="optional">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
552 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
553 <xs:documentation>This attribute can optionally reference the 'id' of the default source file. If a spectrum or scan does not reference a source file and this attribute is set, then it implicitly refers to this source file.</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
554 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
555 </xs:attribute>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
556 <xs:attribute name="sampleRef" type="xs:IDREF" use="optional">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
557 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
558 <xs:documentation>This attribute must reference the 'id' of the appropriate sample.</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
559 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
560 </xs:attribute>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
561 <xs:attribute name="startTimeStamp" type="xs:dateTime" use="optional">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
562 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
563 <xs:documentation>The optional start timestamp of the run, in UT.</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
564 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
565 </xs:attribute>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
566 </xs:extension>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
567 </xs:complexContent>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
568 </xs:complexType>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
569 <xs:complexType name="SourceFileRefType">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
570 <xs:attribute name="ref" type="xs:IDREF" use="required">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
571 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
572 <xs:documentation>This attribute must reference the 'id' of the appropriate sourceFile.</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
573 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
574 </xs:attribute>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
575 </xs:complexType>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
576 <xs:complexType name="SourceFileRefListType">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
577 <xs:sequence>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
578 <xs:element minOccurs="0" maxOccurs="unbounded" name="sourceFileRef" type="dx:SourceFileRefType">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
579 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
580 <xs:documentation>Reference to a previously defined sourceFile.</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
581 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
582 </xs:element>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
583 </xs:sequence>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
584 <xs:attribute name="count" type="xs:nonNegativeInteger" use="required">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
585 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
586 <xs:documentation>This number of source files referenced in this list.</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
587 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
588 </xs:attribute>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
589 </xs:complexType>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
590 <xs:complexType name="SpectrumListType">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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parents:
diff changeset
591 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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parents:
diff changeset
592 <xs:documentation>List and descriptions of spectra.</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
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diff changeset
593 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
594 <xs:sequence>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
595 <xs:element minOccurs="0" maxOccurs="unbounded" name="spectrum" type="dx:SpectrumType" />
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
596 </xs:sequence>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
597 <xs:attribute name="count" type="xs:nonNegativeInteger" use="required">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
598 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
599 <xs:documentation>The number of spectra defined in this mzML file.</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
600 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
601 </xs:attribute>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
602 <xs:attribute name="defaultDataProcessingRef" type="xs:IDREF" use="required">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
603 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
604 <xs:documentation>This attribute MUST reference the 'id' of the default data processing for the spectrum list. If an acquisition does not reference any data processing, it implicitly refers to this data processing. This attribute is required because the minimum amount of data processing that any format will undergo is "conversion to mzML".</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
605 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
606 </xs:attribute>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
607 </xs:complexType>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
608 <xs:complexType name="ScanWindowListType">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
609 <xs:sequence>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
610 <xs:element maxOccurs="unbounded" name="scanWindow" type="dx:ParamGroupType">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
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diff changeset
611 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
612 <xs:documentation>A range of m/z values over which the instrument scans and acquires a spectrum.</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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parents:
diff changeset
613 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
614 </xs:element>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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parents:
diff changeset
615 </xs:sequence>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
616 <xs:attribute name="count" type="xs:int" use="required">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
617 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
618 <xs:documentation>The number of scan windows defined in this list.</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
619 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
620 </xs:attribute>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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parents:
diff changeset
621 </xs:complexType>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
622 <xs:complexType name="ScanListType">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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parents:
diff changeset
623 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
624 <xs:documentation>List and descriptions of scans.</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
625 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
626 <xs:complexContent mixed="false">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
627 <xs:extension base="dx:ParamGroupType">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
628 <xs:sequence>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
629 <xs:element maxOccurs="unbounded" name="scan" type="dx:ScanType" />
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
630 </xs:sequence>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
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diff changeset
631 <xs:attribute name="count" type="xs:nonNegativeInteger" use="required">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
632 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
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diff changeset
633 <xs:documentation>the number of scans defined in this list.</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
634 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
635 </xs:attribute>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
636 </xs:extension>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
637 </xs:complexContent>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
638 </xs:complexType>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
639 <xs:complexType name="ScanType">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
640 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
641 <xs:documentation>Scan or acquisition from original raw file used to create this peak list, as specified in sourceFile.</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
642 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
643 <xs:complexContent mixed="false">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
644 <xs:extension base="dx:ParamGroupType">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
645 <xs:sequence>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
646 <xs:element minOccurs="0" name="scanWindowList" type="dx:ScanWindowListType">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
647 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
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diff changeset
648 <xs:documentation>Container for a list of scan windows.</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
649 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
650 </xs:element>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
651 </xs:sequence>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
652 <xs:attribute name="spectrumRef" type="xs:string" use="optional">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
653 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
654 <xs:documentation>For scans that are local to this document, this attribute can be used to reference the 'id' attribute of the spectrum corresponding to the scan.</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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parents:
diff changeset
655 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
656 </xs:attribute>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
657 <xs:attribute name="sourceFileRef" type="xs:IDREF" use="optional">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
658 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
659 <xs:documentation>If this attribute is set, it must reference the 'id' attribute of a sourceFile representing the external document containing the spectrum referred to by 'externalSpectrumID'.
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
660 </xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
661 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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parents:
diff changeset
662 </xs:attribute>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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parents:
diff changeset
663 <xs:attribute name="externalSpectrumID" type="xs:string" use="optional">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
664 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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parents:
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665 <xs:documentation>For scans that are external to this document, this string must correspond to the 'id' attribute of a spectrum in the external document indicated by 'sourceFileRef'.</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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666 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
667 </xs:attribute>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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parents:
diff changeset
668 <xs:attribute name="instrumentConfigurationRef" type="xs:IDREF" use="optional">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
669 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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670 <xs:documentation>This attribute can optionally reference the 'id' attribute of the appropriate instrument configuration.</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
671 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
672 </xs:attribute>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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parents:
diff changeset
673 </xs:extension>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
674 </xs:complexContent>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
675 </xs:complexType>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
676 <xs:complexType name="PrecursorListType">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
677 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
678 <xs:documentation>List and descriptions of precursor isolations to the spectrum currently being described, ordered.</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
679 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
680 <xs:sequence>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
681 <xs:element maxOccurs="unbounded" name="precursor" type="dx:PrecursorType" />
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
682 </xs:sequence>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
683 <xs:attribute name="count" type="xs:nonNegativeInteger" use="required">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
684 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
685 <xs:documentation>The number of precursor isolations in this list.</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
686 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
687 </xs:attribute>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
688 </xs:complexType>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
689 <xs:complexType name="PrecursorType">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
690 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
691 <xs:documentation>The method of precursor ion selection and activation</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
692 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
693 <xs:sequence>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
694 <xs:element minOccurs="0" maxOccurs="1" name="isolationWindow" type="dx:ParamGroupType">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
695 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
696 <xs:documentation>This element captures the isolation (or 'selection') window configured to isolate one or more ionss.</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
697 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
698 </xs:element>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
699 <xs:element minOccurs="0" maxOccurs="1" name="selectedIonList" type="dx:SelectedIonListType">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
700 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
701 <xs:documentation>A list of ions that were selected.</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
702 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
703 </xs:element>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
704 <xs:element name="activation" type="dx:ParamGroupType">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
705 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
706 <xs:documentation>The type and energy level used for activation.</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
707 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
708 </xs:element>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
709 </xs:sequence>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
710 <xs:attribute name="spectrumRef" type="xs:string" use="optional">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
711 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
712 <xs:documentation>For precursor spectra that are local to this document, this attribute must be used to reference the 'id' attribute of the spectrum corresponding to the precursor spectrum.</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
713 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
714 </xs:attribute>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
715 <xs:attribute name="sourceFileRef" type="xs:IDREF" use="optional">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
716 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
717 <xs:documentation>For precursor spectra that are external to this document, this attribute must reference the 'id' attribute of a sourceFile representing that external document.</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
718 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
719 </xs:attribute>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
720 <xs:attribute name="externalSpectrumID" type="xs:string" use="optional">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
721 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
722 <xs:documentation>For precursor spectra that are external to this document, this string must correspond to the 'id' attribute of a spectrum in the external document indicated by 'sourceFileRef'.</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
723 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
724 </xs:attribute>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
725 </xs:complexType>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
726 <xs:complexType name="SelectedIonListType">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
727 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
728 <xs:documentation>The list of selected precursor ions.</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
729 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
730 <xs:sequence>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
731 <xs:element minOccurs="1" maxOccurs="unbounded" name="selectedIon" type="dx:ParamGroupType" />
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
732 </xs:sequence>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
733 <xs:attribute name="count" type="xs:nonNegativeInteger" use="required">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
734 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
735 <xs:documentation>The number of selected precursor ions defined in this list.</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
736 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
737 </xs:attribute>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
738 </xs:complexType>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
739 <xs:complexType name="ProductListType">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
740 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
741 <xs:documentation>List and descriptions of product isolations to the spectrum currently being described, ordered.</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
742 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
743 <xs:sequence>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
744 <xs:element maxOccurs="unbounded" name="product" type="dx:ProductType" />
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
745 </xs:sequence>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
746 <xs:attribute name="count" type="xs:nonNegativeInteger" use="required">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
747 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
748 <xs:documentation>The number of product isolations in this list.</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
749 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
750 </xs:attribute>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
751 </xs:complexType>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
752 <xs:complexType name="ProductType">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
753 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
754 <xs:documentation>The method of product ion selection and activation in a precursor ion scan</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
755 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
756 <xs:sequence>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
757 <xs:element minOccurs="0" maxOccurs="1" name="isolationWindow" type="dx:ParamGroupType">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
758 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
759 <xs:documentation>This element captures the isolation (or 'selection') window configured to isolate one or more ions.</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
760 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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761 </xs:element>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
762 </xs:sequence>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
763 </xs:complexType>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
764 <xs:complexType name="BinaryDataArrayListType">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
765 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
766 <xs:documentation>List of binary data arrays.</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
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diff changeset
767 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
768 <xs:sequence>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
769 <xs:element minOccurs="2" maxOccurs="unbounded" name="binaryDataArray" type="dx:BinaryDataArrayType">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
770 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
771 <xs:documentation>Data point arrays for default data arrays (m/z, intensity, time) and meta data arrays. Default data arrays must not have the attributes 'arrayLength' and 'dataProcessingRef'.</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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772 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
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diff changeset
773 </xs:element>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
774 </xs:sequence>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
775 <xs:attribute name="count" type="xs:nonNegativeInteger" use="required">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
776 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
777 <xs:documentation>The number of binary data arrays defined in this list.</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
778 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
779 </xs:attribute>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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parents:
diff changeset
780 </xs:complexType>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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parents:
diff changeset
781 <xs:complexType name="BinaryDataArrayType">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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parents:
diff changeset
782 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
783 <xs:documentation>The structure into which encoded binary data goes. Byte ordering is always little endian (Intel style). Computers using a different endian style must convert to/from little endian when writing/reading mzML</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
784 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
785 <xs:complexContent mixed="false">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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parents:
diff changeset
786 <xs:extension base="dx:ParamGroupType">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
787 <xs:sequence>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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parents:
diff changeset
788 <xs:element name="binary" type="xs:base64Binary">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
789 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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parents:
diff changeset
790 <xs:documentation>The actual base64 encoded binary data. The byte order is always 'little endian'.</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
791 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
792 </xs:element>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
793 </xs:sequence>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
794 <xs:attribute name="arrayLength" type="xs:nonNegativeInteger" use="optional">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
795 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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parents:
diff changeset
796 <xs:documentation>This optional attribute may override the 'defaultArrayLength' defined in SpectrumType. The two default arrays (m/z and intensity) should NEVER use this override option, and should therefore adhere to the 'defaultArrayLength' defined in SpectrumType. Parsing software can thus safely choose to ignore arrays of lengths different from the one defined in the 'defaultArrayLength' SpectrumType element.</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
797 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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798 </xs:attribute>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
799 <xs:attribute name="dataProcessingRef" type="xs:IDREF" use="optional">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
800 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
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diff changeset
801 <xs:documentation>This optional attribute may reference the 'id' attribute of the appropriate dataProcessing.</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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parents:
diff changeset
802 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
803 </xs:attribute>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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parents:
diff changeset
804 <xs:attribute name="encodedLength" type="xs:nonNegativeInteger" use="required">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
805 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
806 <xs:documentation>The encoded length of the binary data array.</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
807 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
808 </xs:attribute>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
809 </xs:extension>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
810 </xs:complexContent>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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parents:
diff changeset
811 </xs:complexType>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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parents:
diff changeset
812 <xs:complexType name="SpectrumType">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
813 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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parents:
diff changeset
814 <xs:documentation>The structure that captures the generation of a peak list (including the underlying acquisitions). Also describes some of the parameters for the mass spectrometer for a given acquisition (or list of acquisitions).</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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parents:
diff changeset
815 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
816 <xs:complexContent mixed="false">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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parents:
diff changeset
817 <xs:extension base="dx:ParamGroupType">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
818 <xs:sequence>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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parents:
diff changeset
819 <xs:element minOccurs="0" name="scanList" type="dx:ScanListType" />
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
820 <xs:element minOccurs="0" maxOccurs="1" name="precursorList" type="dx:PrecursorListType" />
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
821 <xs:element minOccurs="0" maxOccurs="1" name="productList" type="dx:ProductListType" />
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
822 <xs:element minOccurs="0" maxOccurs="1" name="binaryDataArrayList" type="dx:BinaryDataArrayListType" />
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
823 </xs:sequence>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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parents:
diff changeset
824 <xs:attribute name="id" use="required">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
825 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
826 <xs:documentation>The native identifier for a spectrum. For unmerged native spectra or spectra from older open file formats, the format of the identifier is defined in the PSI-MS CV and referred to in the mzML header. External documents may use this identifier together with the mzML filename or accession to reference a particular spectrum.</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
827 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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parents:
diff changeset
828 <xs:simpleType>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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parents:
diff changeset
829 <xs:restriction base="xs:string">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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parents:
diff changeset
830 <xs:pattern value="\S+=\S+( \S+=\S+)*" />
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
831 </xs:restriction>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
832 </xs:simpleType>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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833 </xs:attribute>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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parents:
diff changeset
834 <xs:attribute name="spotID" type="xs:string" use="optional">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
835 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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836 <xs:documentation>The identifier for the spot from which this spectrum was derived, if a MALDI or similar run.</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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837 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
838 </xs:attribute>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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parents:
diff changeset
839 <xs:attribute name="index" type="xs:nonNegativeInteger" use="required">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
840 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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841 <xs:documentation>The zero-based, consecutive index of the spectrum in the SpectrumList.</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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842 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
843 </xs:attribute>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
844 <xs:attribute name="defaultArrayLength" type="xs:int" use="required">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
845 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
846 <xs:documentation>Default length of binary data arrays contained in this element.</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
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diff changeset
847 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
848 </xs:attribute>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
849 <xs:attribute name="dataProcessingRef" type="xs:IDREF" use="optional">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
850 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
851 <xs:documentation>This attribute can optionally reference the 'id' of the appropriate dataProcessing.</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
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diff changeset
852 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
853 </xs:attribute>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
854 <xs:attribute name="sourceFileRef" type="xs:IDREF" use="optional">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
855 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
856 <xs:documentation>This attribute can optionally reference the 'id' of the appropriate sourceFile.</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
857 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
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diff changeset
858 </xs:attribute>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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parents:
diff changeset
859 </xs:extension>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
860 </xs:complexContent>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
861 </xs:complexType>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
862 <xs:complexType name="ChromatogramListType">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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parents:
diff changeset
863 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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parents:
diff changeset
864 <xs:documentation>List of chromatograms.</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
865 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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parents:
diff changeset
866 <xs:sequence>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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parents:
diff changeset
867 <xs:element minOccurs="1" maxOccurs="unbounded" name="chromatogram" type="dx:ChromatogramType" />
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
868 </xs:sequence>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
869 <xs:attribute name="count" type="xs:nonNegativeInteger" use="required">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
870 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
871 <xs:documentation>The number of chromatograms defined in this mzML file.</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
872 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
873 </xs:attribute>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
874 <xs:attribute name="defaultDataProcessingRef" type="xs:IDREF" use="required">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
875 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
876 <xs:documentation>This attribute MUST reference the 'id' of the default data processing for the chromatogram list. If an acquisition does not reference any data processing, it implicitly refers to this data processing. This attribute is required because the minimum amount of data processing that any format will undergo is "conversion to mzML".</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
877 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
878 </xs:attribute>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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parents:
diff changeset
879 </xs:complexType>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
880 <xs:complexType name="ChromatogramType">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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parents:
diff changeset
881 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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parents:
diff changeset
882 <xs:documentation>A single chromatogram.</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
883 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
884 <xs:complexContent mixed="false">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
885 <xs:extension base="dx:ParamGroupType">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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parents:
diff changeset
886 <xs:sequence>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
887 <xs:element minOccurs="0" name="precursor" type="dx:PrecursorType" />
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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parents:
diff changeset
888 <xs:element minOccurs="0" name="product" type="dx:ProductType" />
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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parents:
diff changeset
889 <xs:element minOccurs="1" maxOccurs="1" name="binaryDataArrayList" type="dx:BinaryDataArrayListType" />
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
890 </xs:sequence>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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parents:
diff changeset
891 <xs:attribute name="id" type="xs:string" use="required">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
892 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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parents:
diff changeset
893 <xs:documentation>A unique identifier for this chromatogram.</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
894 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
895 </xs:attribute>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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parents:
diff changeset
896 <xs:attribute name="index" type="xs:nonNegativeInteger" use="required">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
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diff changeset
897 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
898 <xs:documentation>The zero-based index for this chromatogram in the chromatogram list.</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
899 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
900 </xs:attribute>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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parents:
diff changeset
901 <xs:attribute name="defaultArrayLength" type="xs:int" use="required">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
902 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
903 <xs:documentation>Default length of binary data arrays contained in this element.</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
904 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
905 </xs:attribute>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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parents:
diff changeset
906 <xs:attribute name="dataProcessingRef" type="xs:IDREF" use="optional">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
907 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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parents:
diff changeset
908 <xs:documentation>This attribute can optionally reference the 'id' of the appropriate dataProcessing.</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
909 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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parents:
diff changeset
910 </xs:attribute>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
911 </xs:extension>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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parents:
diff changeset
912 </xs:complexContent>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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parents:
diff changeset
913 </xs:complexType>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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parents:
diff changeset
914 <xs:element name="mzML" type="dx:mzMLType">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
915 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
916 <xs:documentation>This is the root element for the Proteomics Standards Initiative (PSI) mzML schema, which is intended to capture the use of a mass spectrometer, the data generated, and the initial processing of that data (to the level of the peak list).</xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
917 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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parents:
diff changeset
918 <xs:key name="KEY_SPECTRUM_ID">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
919 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
920 <xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
921 This is a unique key constraint on spectrum identifiers stored in the id attribute. It ensures that an id is present and unique among all spectra. Note that this constrains schematic validation only (full semantic validation restricts spectrum IDs to a specified nativeID format).
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
922 </xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
923 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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parents:
diff changeset
924 <xs:selector xpath="./dx:run/dx:spectrumList/dx:spectrum" />
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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parents:
diff changeset
925 <xs:field xpath="@id" />
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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parents:
diff changeset
926 </xs:key>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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diff changeset
927 <xs:key name="KEY_CHROMATOGRAM_ID">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
928 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
929 <xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
930 This is a unique key constraint on chromatogram identifiers stored in the id attribute. It ensures that an id is present and unique among all chromatograms.
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
931 </xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
932 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
933 <xs:selector xpath="./dx:run/dx:chromatogramList/dx:chromatogram" />
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
934 <xs:field xpath="@id" />
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
935 </xs:key>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
936 <xs:key name="KEY_SOURCEFILE_ID">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
937 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
938 <xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
939 This is a unique key constraint on source file identifiers stored in the id attribute. It ensures that an id is present and unique among all source files.
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
940 </xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
941 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
942 <xs:selector xpath="./dx:fileDescription/dx:sourceFileList/dx:sourceFile" />
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
943 <xs:field xpath="@id" />
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
944 </xs:key>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
945 <xs:key name="KEY_CV_ID">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
946 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
947 <xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
948 This is a unique key constraint on CV identifiers stored in the id attribute. It ensures that an id is present and unique among all CVs.
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
949 </xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
950 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
951 <xs:selector xpath="./dx:cvList/dx:cv" />
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
952 <xs:field xpath="@id" />
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
953 </xs:key>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
954 <xs:key name="KEY_RPG_ID">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
955 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
956 <xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
957 This is a unique key constraint on referenceable param group identifiers stored in the id attribute. It ensures that an id is present and unique among all referenceable param groups.
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
958 </xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
959 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
960 <xs:selector xpath="./dx:referenceableParamGroupList/dx:referenceableParamGroup" />
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
961 <xs:field xpath="@id" />
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
962 </xs:key>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
963 <xs:key name="KEY_SAMPLE_ID">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
964 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
965 <xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
966 This is a unique key constraint on sample identifiers stored in the id attribute. It ensures that an id is present and unique among all samples.
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
967 </xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
968 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
969 <xs:selector xpath="./dx:sampleList/dx:sample" />
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
970 <xs:field xpath="@id" />
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
971 </xs:key>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
972 <xs:key name="KEY_IC_ID">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
973 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
974 <xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
975 This is a unique key constraint on instrument configuration identifiers stored in the id attribute. It ensures that an id is present and unique among all instrument configurations.
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
976 </xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
977 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
978 <xs:selector xpath="./dx:instrumentConfigurationList/dx:instrumentConfiguration" />
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
979 <xs:field xpath="@id" />
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
980 </xs:key>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
981 <xs:key name="KEY_DP_ID">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
982 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
983 <xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
984 This is a unique key constraint on data processing identifiers stored in the id attribute. It ensures that an id is present and unique among all data processing elements.
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
985 </xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
986 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
987 <xs:selector xpath="./dx:dataProcessingList/dx:dataProcessing" />
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
988 <xs:field xpath="@id" />
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
989 </xs:key>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
990 <xs:key name="KEY_SOFTWARE_ID">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
991 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
992 <xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
993 This is a unique key constraint on software identifiers stored in the id attribute. It ensures that an id is present and unique among all software elements.
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
994 </xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
995 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
996 <xs:selector xpath="./dx:softwareList/dx:software" />
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
997 <xs:field xpath="@id" />
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
998 </xs:key>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
999 <xs:key name="KEY_SCAN_SETTINGS_ID">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1000 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1001 <xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1002 This is a unique key constraint on scan settings identifiers stored in the id attribute. It ensures that an id is present and unique among all scan settings elements.
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1003 </xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1004 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1005 <xs:selector xpath="./dx:scanSettingsList/dx:scanSettings" />
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1006 <xs:field xpath="@id" />
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1007 </xs:key>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1008 <xs:keyref name="KEYREF_SCAN_SPECTRUMREF" refer="dx:KEY_SPECTRUM_ID">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1009 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1010 <xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1011 This is a reference to spectrum contained within this file. It ensures that an id is present in the file and is one of the values defined in KEY_SPECTRUM_ID.
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1012 </xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1013 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1014 <xs:selector xpath="./dx:run/dx:spectrumList/dx:spectrum/dx:precursorList/dx:precursor" />
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1015 <xs:field xpath="@spectrumRef" />
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1016 </xs:keyref>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1017 <xs:keyref name="KEYREF_PRECURSOR_SPECTRUMREF" refer="dx:KEY_SPECTRUM_ID">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1018 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1019 <xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1020 This is a reference to spectrum contained within this file. It ensures that an id is present in the file and is one of the values defined in KEY_SPECTRUM_ID.
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1021 </xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1022 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1023 <xs:selector xpath="./dx:run/dx:spectrumList/dx:spectrum/dx:scanList/dx:scan" />
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1024 <xs:field xpath="@spectrumRef" />
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1025 </xs:keyref>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1026 <xs:keyref name="KEYREF_PRECURSOR_SOURCEFILEREF" refer="dx:KEY_SOURCEFILE_ID">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1027 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1028 <xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1029 This is a reference to a source file in sourceFileList. It ensures that an id is present in the file and is one of the values defined in KEY_SOURCEFILE_ID.
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1030 </xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1031 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1032 <xs:selector xpath=".//dx:precursor|.//dx:scan" />
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1033 <xs:field xpath="@sourceFileRef" />
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1034 </xs:keyref>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1035 <xs:keyref name="KEYREF_RUN_SAMPLEREF" refer="dx:KEY_SAMPLE_ID">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1036 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1037 <xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1038 This is a reference to a sample in sampleList. It ensures that an id is present in the file and is one of the values defined in KEY_SAMPLE_ID.
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1039 </xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1040 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1041 <xs:selector xpath="./dx:run" />
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1042 <xs:field xpath="@sampleRef" />
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1043 </xs:keyref>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1044 <xs:keyref name="KEYREF_SOFTWAREREF" refer="dx:KEY_SOFTWARE_ID">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1045 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1046 <xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1047 This is a reference to an instrument configuration in instrumentConfigurationList. It ensures that an id is present in the file and is one of the values defined in KEY_SOFTWARE_ID.
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1048 </xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1049 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1050 <xs:selector xpath=".//dx:processingMethod" />
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1051 <xs:field xpath="@softwareRef" />
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1052 </xs:keyref>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1053 <xs:keyref name="KEYREF_DEFAULTDPREF" refer="dx:KEY_DP_ID">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1054 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1055 <xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1056 This is a reference to a data processing element in dataProcessingList. It ensures that an id is present in the file and is one of the values defined in KEY_DP_ID.
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1057 </xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1058 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1059 <xs:selector xpath="./dx:run/dx:spectrumList|./dx:run/dx:chromatogramList" />
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1060 <xs:field xpath="@defaultDataProcessingRef" />
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1061 </xs:keyref>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1062 <xs:keyref name="KEYREF_DPREF" refer="dx:KEY_DP_ID">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1063 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1064 <xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1065 This is a reference to a data processing element in dataProcessingList. It ensures that an id is present in the file and is one of the values defined in KEY_DP_ID.
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1066 </xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1067 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1068 <xs:selector xpath=".//dx:spectrum|.//dx:chromatogram|.//dx:binaryDataArray" />
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1069 <xs:field xpath="@dataProcessingRef" />
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1070 </xs:keyref>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1071 <xs:keyref name="KEYREF_CVREF" refer="dx:KEY_CV_ID">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1072 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1073 <xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1074 This is a reference to a CV in cvList. It ensures that an id is present in the file and is one of the values defined in KEY_CV_ID.
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1075 </xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1076 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1077 <xs:selector xpath=".//dx:cvParam" />
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1078 <xs:field xpath="@cvRef" />
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1079 </xs:keyref>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1080 <xs:keyref name="KEYREF_UNITCVREF" refer="dx:KEY_CV_ID">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1081 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1082 <xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1083 This is a reference to the CV in cvList used for unit terms. It ensures that an id is present in the file and is one of the values defined in KEY_CV_ID.
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1084 </xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1085 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1086 <xs:selector xpath=".//dx:cvParam|.//dx:userParam" />
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1087 <xs:field xpath="@unitCvRef" />
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1088 </xs:keyref>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1089 <xs:keyref name="KEYREF_RPGREF" refer="dx:KEY_RPG_ID">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1090 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1091 <xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1092 This is a reference to a referenceable param group in referenceableParamGroupList. It ensures that an id is present in the file and is one of the values defined in KEY_RPG_ID.
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1093 </xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
diff changeset
1094 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
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1095 <xs:selector xpath=".//dx:referenceableParamGroupRef" />
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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1096 <xs:field xpath="@ref" />
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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1097 </xs:keyref>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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1098 <xs:keyref name="KEYREF_DEFAULTICREF" refer="dx:KEY_IC_ID">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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1099 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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1100 <xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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1101 This is a reference to an instrument configuration in instrumentConfigurationList. It ensures that an id is present in the file and is one of the values defined in KEY_IC_ID.
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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1102 </xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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1103 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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1104 <xs:selector xpath="./dx:run/dx:spectrumList|./dx:run/dx:chromatogramList" />
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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1105 <xs:field xpath="@defaultInstrumentConfigurationRef" />
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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1106 </xs:keyref>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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1107 <xs:keyref name="KEYREF_ICREF" refer="dx:KEY_IC_ID">
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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1108 <xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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1109 <xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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1110 This is a reference to an instrument configuration in instrumentConfigurationList. It ensures that an id is present in the file and is one of the values defined in KEY_IC_ID.
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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1111 </xs:documentation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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1112 </xs:annotation>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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1113 <xs:selector xpath=".//dx:scan" />
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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1114 <xs:field xpath="@instrumentConfigurationRef" />
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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1115 </xs:keyref>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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1116 </xs:element>
5961146e0d1a planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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1117 </xs:schema>