Mercurial > repos > recetox > aplcms_to_ramclustr_converter

changeset 5:b9263b8fcc1e draft

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"planemo upload for repository https://github.com/RECETOX/galaxytools/tools/aplcms_to_ramclustr_converter/ commit 9bc547872c98a9c13c561d15e8990fe82bdc0e72"
author recetox
date Fri, 28 Jan 2022 16:20:51 +0000
parents 9ea34e24474f
children a7f2f8d6f44b
files aplcms_to_ramclustr_converter.xml macros.xml
diffstat 2 files changed, 40 insertions(+), 9 deletions(-) [+]
line wrap: on
line diff
--- a/aplcms_to_ramclustr_converter.xml	Mon Aug 09 15:29:08 2021 +0000
+++ b/aplcms_to_ramclustr_converter.xml	Fri Jan 28 16:20:51 2022 +0000
@@ -1,5 +1,9 @@
 <tool id="aplcms_to_ramclustr_converter" name="apLCMS to RamClustR converter" version="0.1.0+galaxy0" python_template_version="3.5">
     <description>converts apLCMS parquet output to RamClustR csv input</description>
+    <macros>
+        <import>macros.xml</import>
+    </macros>
+    <expand macro="creator"/>
     <requirements>
         <requirement type="package" version="1.1.5">pandas</requirement>
         <requirement type="package" version="4.0.0">pyarrow</requirement>
@@ -19,13 +23,9 @@
             <output name="out_file" file="output.csv" ftype="csv"/>
         </test>
     </tests>
-    <help><![CDATA[
-        Tool to convert apLCMS output to csv file formated in accordance to RamClustR (CSV) input requirements.
-
-        **Workflow position**
-
-        - Upstream tool: `apLCMS <https://github.com/RECETOX/galaxytools/tree/master/tools/recetox_aplcms>`_  Unsupervised or Hybrid
-
-        - Downstream tool: `RamClustR <https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr>`_ (CSV)
-    ]]></help>
+    <help>
+        <![CDATA[
+        @HELP@
+        ]]>
+    </help>
 </tool>
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/macros.xml	Fri Jan 28 16:20:51 2022 +0000
@@ -0,0 +1,31 @@
+<macros>
+    <xml name="creator">
+        <creator>
+            <person
+                givenName="Martin"
+                familyName="Čech"
+                url="https://github.com/martenson"
+                identifier="0000-0002-9318-1781" />
+            <person
+                givenName="Maksym"
+                familyName="Skoryk"
+                url="https://github.com/maximskorik"
+                identifier="0000-0003-2056-8018" />
+            <organization
+                url="https://www.recetox.muni.cz/"
+                email="GalaxyToolsDevelopmentandDeployment@space.muni.cz"
+                name="RECETOX MUNI" />
+        </creator>
+    </xml>
+    <token name="@HELP@">
+        <![CDATA[
+            Tool to convert apLCMS output to csv file formated in accordance to RamClustR (CSV) input requirements.
+
+            **Workflow position**
+
+            - Upstream tool: `apLCMS <https://github.com/RECETOX/galaxytools/tree/master/tools/recetox_aplcms>`_  Unsupervised or Hybrid
+
+            - Downstream tool: `RamClustR <https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr>`_ (CSV)
+        ]]>
+    </token>
+</macros>