Mercurial > repos > recetox > aplcms_to_ramclustr_converter

comparison aplcms_to_ramclustr_converter.xml @ 5:b9263b8fcc1e draft

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"planemo upload for repository https://github.com/RECETOX/galaxytools/tools/aplcms_to_ramclustr_converter/ commit 9bc547872c98a9c13c561d15e8990fe82bdc0e72"
author recetox
date Fri, 28 Jan 2022 16:20:51 +0000
parents 9ea34e24474f
children a7f2f8d6f44b
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4:9ea34e24474f 5:b9263b8fcc1e
1 <tool id="aplcms_to_ramclustr_converter" name="apLCMS to RamClustR converter" version="0.1.0+galaxy0" python_template_version="3.5"> 1 <tool id="aplcms_to_ramclustr_converter" name="apLCMS to RamClustR converter" version="0.1.0+galaxy0" python_template_version="3.5">
2 <description>converts apLCMS parquet output to RamClustR csv input</description> 2 <description>converts apLCMS parquet output to RamClustR csv input</description>
3 <macros>
4 <import>macros.xml</import>
5 </macros>
6 <expand macro="creator"/>
3 <requirements> 7 <requirements>
4 <requirement type="package" version="1.1.5">pandas</requirement> 8 <requirement type="package" version="1.1.5">pandas</requirement>
5 <requirement type="package" version="4.0.0">pyarrow</requirement> 9 <requirement type="package" version="4.0.0">pyarrow</requirement>
6 </requirements> 10 </requirements>
7 <command detect_errors="exit_code"><![CDATA[ 11 <command detect_errors="exit_code"><![CDATA[
17 <test> 21 <test>
18 <param name="aplcms_dataframe" value="input.parquet" ftype="parquet"/> 22 <param name="aplcms_dataframe" value="input.parquet" ftype="parquet"/>
19 <output name="out_file" file="output.csv" ftype="csv"/> 23 <output name="out_file" file="output.csv" ftype="csv"/>
20 </test> 24 </test>
21 </tests> 25 </tests>
22 <help><![CDATA[ 26 <help>
23 Tool to convert apLCMS output to csv file formated in accordance to RamClustR (CSV) input requirements. 27 <![CDATA[
24 28 @HELP@
25 **Workflow position** 29 ]]>
26 30 </help>
27 - Upstream tool: `apLCMS <https://github.com/RECETOX/galaxytools/tree/master/tools/recetox_aplcms>`_ Unsupervised or Hybrid
28
29 - Downstream tool: `RamClustR <https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr>`_ (CSV)
30 ]]></help>
31 </tool> 31 </tool>