Mercurial > repos > rdvelazquez > hyphy_relax

changeset 2:f078fc88982d draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit b'17327d46ff082448f0a0fc3b6827f5d9d6124a10\n'-dirty
author rdvelazquez
date Tue, 08 Jan 2019 11:34:44 -0500
parents a046be57e024
children 0648b03f1d2f
files hyphy_relax.xml
diffstat 1 files changed, 6 insertions(+), 6 deletions(-) [+]
line wrap: on
line diff
--- a/hyphy_relax.xml	Tue Jan 08 10:58:10 2019 -0500
+++ b/hyphy_relax.xml	Tue Jan 08 11:34:44 2019 -0500
@@ -8,15 +8,15 @@
     <version_command>HYPHYMP --version | tail -n 1 | awk '{print $1}'</version_command>
     <command detect_errors="exit_code">
     <![CDATA[
-    #if $treeAnnotations == 1:
+    #if $treeAnnotations == 2:
         ln -s '$input_file' relax_input.fa &&
         ln -s '$input_nhx' relax_input.nhx &&
         echo $gencodeid > tool_params &&
         echo `pwd`/relax_input.fa >> tool_params &&
         echo `pwd`/relax_input.nhx >> tool_params &&
-        echo 3 &&
-        echo 2 &&
-        echo $analysisType > tool_params &&
+        echo '3' &&
+        echo '2' &&
+        echo '$analysisType' >> tool_params &&
         @HYPHY_INVOCATION@ \$HYPHY_LIB/TemplateBatchFiles/SelectionAnalyses/RELAX.bf > '$relax_log'
     #else:
         ln -s '$input_file' relax_input.fa &&
@@ -24,8 +24,8 @@
         echo $gencodeid > tool_params &&
         echo `pwd`/relax_input.fa >> tool_params &&
         echo `pwd`/relax_input.nhx >> tool_params &&
-        echo 2 &&
-        echo $analysisType > tool_params &&
+        echo '2' &&
+        echo '$analysisType' > tool_params &&
         @HYPHY_INVOCATION@ \$HYPHY_LIB/TemplateBatchFiles/SelectionAnalyses/RELAX.bf > '$relax_log'
     #end if
     ]]>