Mercurial > repos > rdvelazquez > hyphy_busted
changeset 3:d0a3511a8f33 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit b'6e7f074d80e0f35516e223b76e73f019ad45dd74\n'-dirty
| author | rdvelazquez |
|---|---|
| date | Mon, 18 Feb 2019 15:14:26 -0500 |
| parents | 0d4341fca959 |
| children | f8abbbc7e29e |
| files | macros.xml test-data/gard-in1.fa test-data/gard-out1.json test-data/gard-out1.nex test-data/relax-in1.fa test-data/relax-in1.nhx test-data/relax-in2.nhx test-data/relax-out1.json |
| diffstat | 8 files changed, 8004 insertions(+), 49 deletions(-) [+] |
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--- a/macros.xml Mon Feb 11 14:14:48 2019 -0500 +++ b/macros.xml Mon Feb 18 15:14:26 2019 -0500 @@ -1,53 +1,55 @@ <?xml version="1.0"?> <macros> - <xml name="inputs"> - <param name="input_file" type="data" format="fasta" label="Input FASTA file" /> - <param name="input_nhx" type="data" format="nhx" label="Input newick file" /> - </xml> - <xml name="gencode"> - <param name="gencodeid" type="select" label="Genetic code"> - <option value="1">Universal code</option> - <option value="2">Vertebrate mitochondrial DNA code</option> - <option value="3">Yeast mitochondrial DNA code</option> - <option value="4">Mold, Protozoan and Coelenterate mt; Mycloplasma/Spiroplasma</option> - <option value="5">Invertebrate mitochondrial DNA code</option> - <option value="6">Ciliate, Dasycladacean and Hexamita Nuclear code</option> - <option value="7">Echinoderm mitochondrial DNA code</option> - <option value="8">Euplotid Nuclear code</option> - <option value="9">Alternative Yeast Nuclear code</option> - <option value="10">Ascidian mitochondrial DNA code</option> - <option value="11">Flatworm mitochondrial DNA code</option> - <option value="12">Blepharisma Nuclear code</option> - </param> - </xml> - <xml name="branches"> - <param name="branches" type="select" label="Set of branches to test"> - <option value="1">All branches</option> - <option value="2">Internal branches</option> - <option value="3">Leaf branches</option> - <option value="4">Unlabeled branches</option> - </param> - </xml> - <xml name="version_command"> - <version_command>HYPHYMP --version | tail -n 1 | awk '{print $1}'</version_command> - </xml> - <xml name="citations"> - <citations> - <citation type="doi">10.1093/bioinformatics/bti079</citation> - <yield /> - </citations> - </xml> - <token name="@VERSION@">2.3.14</token> - <xml name="requirements"> - <requirements> - <requirement type="package" version="@VERSION@">hyphy</requirement> - <yield /> - </requirements> - </xml> - <token name="@HYPHY_ENVIRONMENT@"><![CDATA[export HYPHY=`which HYPHYMP` && + <xml name="inputs"> + <param name="input_file" type="data" format="fasta" label="Input FASTA file"/> + <param name="input_nhx" type="data" format="nhx" label="Input newick file"/> + </xml> + <xml name="gencode"> + <param name="gencodeid" type="select" label="Genetic code"> + <option value="1">Universal code</option> + <option value="2">Vertebrate mitochondrial DNA code</option> + <option value="3">Yeast mitochondrial DNA code</option> + <option value="4">Mold, Protozoan and Coelenterate mt; Mycloplasma/Spiroplasma</option> + <option value="5">Invertebrate mitochondrial DNA code</option> + <option value="6">Ciliate, Dasycladacean and Hexamita Nuclear code</option> + <option value="7">Echinoderm mitochondrial DNA code</option> + <option value="8">Euplotid Nuclear code</option> + <option value="9">Alternative Yeast Nuclear code</option> + <option value="10">Ascidian mitochondrial DNA code</option> + <option value="11">Flatworm mitochondrial DNA code</option> + <option value="12">Blepharisma Nuclear code</option> + </param> + </xml> + <xml name="branches"> + <param name="branches" type="select" label="Set of branches to test"> + <option value="1">All branches</option> + <option value="2">Internal branches</option> + <option value="3">Leaf branches</option> + <option value="4">Unlabeled branches</option> + </param> + </xml> + <xml name="version_command"> + <version_command>HYPHYMP --version | tail -n 1 | awk '{print $1}'</version_command> + </xml> + <xml name="citations"> + <citations> + <citation type="doi">10.1093/bioinformatics/bti079</citation> + <yield/> + </citations> + </xml> + <token name="@VERSION@">2.3.14</token> + <xml name="requirements"> + <requirements> + <requirement type="package" version="@VERSION@">hyphy</requirement> + <yield/> + </requirements> + </xml> + <token name="@HYPHY_ENVIRONMENT@"><![CDATA[export HYPHY=`which HYPHYMP` && export HYPHY_PATH=`dirname \$HYPHY` && -export HYPHY_LIB=`readlink -f \$HYPHY_PATH/../lib/hyphy` &&]]> - </token> - <token name="@HYPHY_INVOCATION@"><![CDATA[@HYPHY_ENVIRONMENT@ cat tool_params | HYPHYMP LIBPATH=\$HYPHY_LIB ]]></token> - <token name="@HYPHYMPI_INVOCATION@"><![CDATA[@HYPHY_ENVIRONMENT@ cat tool_params | mpirun -np \${GALAXY_SLOTS:-1} HYPHYMPI LIBPATH=\$HYPHY_LIB ]]></token> +export HYPHY_LIB=`readlink -f \$HYPHY_PATH/../lib/hyphy` &&]]></token> + <token name="@HYPHY_INVOCATION@"><![CDATA[@HYPHY_ENVIRONMENT@ cat tool_params | HYPHYMP LIBPATH=\$HYPHY_LIB ]]></token> + <token name="@HYPHYMPI_INVOCATION@"><![CDATA[export HYPHYMPI=`which HYPHYMPI` && +export HYPHYMPI_PATH=`dirname \$HYPHYMPI` && +export HYPHYMPI_LIB=`readlink -f \$HYPHYMPI_PATH/../lib/hyphy` && +cat tool_params | mpirun -np \${GALAXY_SLOTS:-2} HYPHYMPI LIBPATH=\$HYPHYMPI_LIB ]]></token> </macros>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/gard-in1.fa Mon Feb 18 15:14:26 2019 -0500 @@ -0,0 +1,735 @@ +>TREESPARROW_HENAN_1_2004 +ATGGAGAAAATAGTGCTTCTTCGTGCAATGATCAATCTTGTTAAAAGTGA +TCAGATTGGCGTTGGTTACCATGCAGACTACTCGACAGAGCAGGGTGACA +CAATAATGGAAAAGAACGTTACTGTTACACATGCTCAAGACATATTGGAA +AAGACACACAACGGGAAGCTCTGCGACCTAGATGGAGTGAAGCCTCTAAT +TTTGAAAGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCAATGTGTG +ACGAATTCATCAATGTGCCGGAGTGGTCTTACATAGTGGAGAAGGCCAGT +CCAGCCAATGACCTCTGTTACCCAGGGGATTTCAACGACTATGAAGAACT +GAAACACCTATTGAGCAGAATAAACCATTTTGAAAAAATTCAGATCATCC +CCAAAAGTTCTTGGTCCGATCATGAAGCCTCATCAGGGGTGAGCTCAGCA +TGTCCATACCTGGGGAAGCCCTCCTTTTTCAGAAATGTGGTATGGCTTAT +CAAAAAGAACAGTACATACCCAACAATAAAGAGGGGCTACAATAATACCA +ACCCAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG +GCAGAGCAGATAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGG +AACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCTACTAGATCCA +AAGTAAATGGGCAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAG +CCGAATGACGCTATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGA +ATATGCATACCAAATTGTCAAGAAAGGGGACTCAGCAATTATGAAAAGTG +AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG +ATAAACTCTAGTATGCCATTCCACAACATACACCCTCTCACCATCGGGGA +ATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACAGGGCTCA +GAAATAGCCCTCAAAGAGAGAGAAGAAGAAAAAAGAGAGGACTATTTGGA +GCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTG +GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACA +AAGAATCCACTCAAAAAGCAATAGATGGAGTCACCAATAAGGTCAACTCG +ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA +TAACTTAGAAAGGAGAATAGAAAATTTAAACAAGAAGATGGAGGACGGAT +TCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAAT +GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGAAAA +GGTCCGACTACAACTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTT +TCGAGTTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAAAAAC +GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAACAGAGA +GGAAATAAGTGGAGTAAAATTGGAATCAATAGGAACTTACCAAATACTGT +CAATTTATTCAACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCT +GGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT +>HUMAN_VIETNAM_CL105_2005 +ATGGAGAAAATAGTGCTTCTTTTTGCGATAGTCAGTCTTGTTAAAAGTGA +TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA +CAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAA +AAGACACACAACGGGAAGCTCTGCGATCTAGATGGAGTGAAGCCTCTAAT +TTTGAGAGATTGTAGTGTAGCTGGATGGCTACTCGGAAACCCAATGTGTG +ACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGTCAAT +CCAGTCAATGACCTCTGTTACCCAGGGGTTTTCAATGACTATGAAGAATT +GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC +CCAAAAGTTCTTGGTCCAGTCATGAAGCCTCATTAGGGGTGAGCTCAGTA +TGTCCATACCAGGGAAAGTCCTCCTTTTTCAGAAATGTGGTATGGCTTAT +CAAAAAGAACAGTACATACCCAACAATAAAGAGGAGCTACAATAATACCA +ACCAAGAAGATCTTTTGGTAATATGGGGGATTCATCATCCTAATGATGCG +GCAGAGCAGATAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGG +GACATCAACACTAAACCAGAGATTGGTACCAAGAATAGCTACTAGATCCA +AAGTAAACGGGCAAAGTGGGAGGATGGAGTTCTTCTGGACAATTTTAAAA +CCGAATGATGCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGA +ATATGCATACAAGATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTG +AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG +ATAAACTCTAGTATGCCATTCCACAATATACACCCTCTCACCATCGGGGA +ATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGGCTCA +GAAATAGCCCTCAAAAAGAGAGAAGAAGAAAAAAGAGAGGATTATTTGGA +GCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTG +GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGGTACGCTGCAGACA +AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG +ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA +CAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGGT +TCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAAT +GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA +GGTCCGACTACAGCTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTT +TCGAGTTCTATCATAAATGTGATAATGAATGTATGGAAAGTGTAAGAAAC +GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGATTAAAAAGAGA +GGAAATAAGTGGAGTAAAATTGGAATCAATAGGAATTTACCAAATACTGT +CAATTTATTCTACAGTGGCGAGTTCCCTAGCACTGGCAATCATGATAGCT +GGTCTATCCTTATGGATGTGCTCCAATGGGTCGTTACAA--------- +>TREESPARROW_HENAN_4_2004 +ATGGAGAAAATAGTGCTTCTTCTTGCAATAGTCAGTCTTGTTAAAAGTGA +TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA +CAATAATGCAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAA +AAGACACACAACGGGAAGCTCTGCGATCTAGATGGAGTGAAACCTCTAAT +TTTAAGAGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCAATGTGTG +ACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAGT +CCAGCCAATGACCTCTGTTACCCAGGGGATTTCAACGACTATGAAGAACT +GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC +CCAAAAGTTCTTGGTCCGATCATGAAGCCTCATCAGGGGTGAGCTCAGCA +TGTCCATACCAGGGGAGTCCCTCCTTTTTCAGAAATGTGGTATGGCTTAT +CAAAAAGAACAGTGCATACCCAACAATAAAGAGGAGCTACAATAATACCA +ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG +GCAGAGCAGACAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGG +AACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCTACTAGATCCA +AAGTAAATGGGCAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAG +CCGAATGACGCTATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGA +ATATGCATACAAAATTGTCAAGAAAGGGGACTCAGCAATTATGAAAAGTG +AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG +ATAAACTCTAGTATGCCATTCCACAACATACACCCTCTCACCATCGGGGA +ATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACAGGGCTCA +GAAATAGCCCTCAAAGAGAGAGAAGAAGAAAAAAGAGAGGACTATTTGGA +GCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTG +GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACA +AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG +ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA +TAACTTAGAAAGGAGAATAGAAAATTTAAACAAGAAGATGGAGGACGGAT +TCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAAT +GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGAAAA +GGTCCGACTACAACTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTT +TCGAGTTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAAAAAC +GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAACAGAGA +GGAAATAAGTGGAGTAAAATTGGAATCAATAGGAACTTACCAAATACTGT +CAATTTATTCAACAGTGGTGAGTTCCCTAGCACTGGCAATCATGGTAGCT +GGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT +>CHICKEN_HEBEI_326_2005 +ATGGAGAGAATAGTGCTTCTTCTTGCAATAATCGGTCTTGTTAAAAGTGA +TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA +CAATAATGGAAAAGAACGTTACTGTTACACATGCTCAAGACATACTGGAG +AAGACACACAACGGGAAGCTCTGCAACCCAGATGGAGTGAAGCCTCTAAT +TTTGAAAGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCAATGTGTG +ACGAATTTATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAGT +CCAGCCAATGGCCTCTGTTACCCAGGGGATTTCAATGACTATGAAGAACT +GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC +CCAAAAGTTCTTGGTCCGATCATGGAGCCTCATCAGGGGTGAGCTCAGCA +TGTTCCTATCTGGGGAAGCCCTCCTTTTTCAGAAATGTGGTATGGCTTAT +CAAAAAGAATAATACATACCCACCAATAAAGGTGAGCTACAACAATACCA +ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCCAATGATGAG +GCAGAGCAGATAAAGATCTATCAAAACCCAACCACCTATATTTCCGTTGG +AACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCTACTAGATCCA +AAGTAAACGGGCAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAG +CCGAATGATGCTATCAATTTCGATAGTAATGGAAATTTCATTGCTCCAGA +ATATGCATACAAAATTGTCAAGAAAGGGGACTCAGCGATTATGAAAAGTG +AATTGGAATATGGCAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG +ATAAATTCTAGTATGCCATTCCACAACATACACCCTCTCACCGTCGGGGA +ATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTCGCGACTGGACTCA +GAAATGCCCCTCAAAGAGAGGGAGGAAGAAAAAAGAGAGGACTATTTGGA +GCCATAGCAGGGTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTG +GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACA +AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG +ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA +TAACTTAGAAAGGAGAATAGAAAATTTAAACAAGAAGATGGAGGACGGAT +TCCTAGATGTCTGGACTTATAACGCTGAACTTCTGGTTCTCATGGAAAAT +GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGAAAA +GGTCCGACTACAGCTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTT +TCGAGTTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAAAAAC +GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAACAGAGA +GGAAATAAGTGGAGTAAAATTGGAATCAATGGGAACTTACCAAATACTGT +CAATTTATTCAACAGTGGCGAGTTCCCTAGCATTGGCAATCATGGTAGCT +GGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT +>CHICKEN_HONGKONG_915_97 +ATGGAGAAAATAGTGCTTCTTCTTGCAACAGTCAGTCTTGTTAAAAGTGA +TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA +CAATAATGGAAAAGAATGTTACTGTTACACATGCCCAAGACATACTGGAA +AGGACACACAACGGGAAGCTCTGCGATCTAAATGGAGTGAAACCTCTCAT +TTTGAGGGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCTATGTGTG +ACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAGT +CCAGCCAATGACCTCTGTTATCCAGGGAATTTCAACGACTATGAAGAACT +GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC +CCAAAAGTTCTTGGTCCAATCATGATGCCTCATCAGGGGTGAGCTCAGCA +TGTCCATACCTTGGGAGGTCCTCCTTTTTCAGAAATGTGGTATGGCTTAT +CAAAAAGAACAGTGCATACCCAACAATAAAGAGGAGCTACAATAATACCA +ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG +GCAGAGCAGACAAAGCTCTATCAAAATCCAACCACCTACATTTCCGTTGG +AACATCAACACTGAACCAGAGATTGGTTCCAGAAATAGCTACTAGACCCA +AAGTAAACGGGCAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAG +CCGAATGATGCCATCAATTTCGAGAGTAATGGAAATTTCATTGCCCCAGA +ATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTG +AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG +ATAAACTCTAGTATGCCATTCCACAACATACACCCCCTCACCATCGGGGA +ATGCCCCAAATATGTGAAATCAAACAGATTAGTTCTTGCGACTGGACTCA +GAAATACCCCTCAAAGGGAGAGAAGAAGAAAAAAGAGAGGACTATTTGGA +GCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGCATGGTAGATGGTTG +GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACA +AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG +ATCATTAACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA +TAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAAATGGAAGACGGAT +TCCTAGATGTCTGGACTTACAATGCTGAACTTCTGGTTCTCATGGAAAAT +GAGAGAACTCTCGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA +GGTCCGACTACAGCTTAGGGATAATGCAAAGGAACTGGGTAATGGTTGTT +TCGAATTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAAAAAC +GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAACAGAGA +GGAAATAAGTGGAGTAAAATTGGAATCAATGGGAACTTACCAAATACTGT +CAATTTATTCAACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCT +GGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT +>VIETNAM_3062_2004 +ATGGAGAAAATAGTGCTTCTTTTTGCAATAGTCAGTCTTGTTAAAAGTGA +TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA +CAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAA +AAGACACACAACGGGAAGCTCTGCGATCTAGATGGAGTGAAGCCTCTAAT +TTTGAGAGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCAATGTGTG +ACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAAT +CCAGTCAATGACCTCTGTTACCCAGGGGATTTCAATGACTATGAAGAATT +GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC +CCAAAAGTTCTTGGTCCAGTCATGAAGCCTCATTAGGAGTGAGCTCAGCA +TGTCCATACCAGGGAAAGTCCTCCTTTTTCAGAAATGTGGTATGGCTTAT +CAAAAAGAACAGTACATACCCAACAATAAAGAGGAGCTACAATAATACCA +ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG +GCAGAGCAGACAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGG +GACATCAACACTAAACCAGAGGTTGGTACCAAGAATAGCTACTAGATCCA +AAGTAAACGGGCAAAGTGGAAGGATGGAGTTCTTCTGGACAATTTTAAAA +CCGAATGATGCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGA +ATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTG +AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG +ATAAACTCTAGTATGCCATTCCACAATATACACCCTCTCACCATCGGGGA +ATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGGCTCA +GAAATAGCCCTCAAAGAGAGAGAAGAAGAAAAAAGAGAGGATTATTTGGA +GCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTG +GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGGTACGCTGCAGACA +AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG +ATCATTGACAAAATGAACACTCAATTTGAGGCCGTTGGAAGGGAATTTAA +CAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGGT +TCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAAT +GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA +GGTCCGACTACAGCTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTT +TCGAGTTCTATCATAAATGTGATAATGAATGTATGGAAAGTGTAAGAAAC +GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAAAAGAGA +GGAAATAAGTGGAGTAAAATTGGAATCAATAGGAATTTACCAAATACTGT +CAATTTATTCTACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCT +GGTCTATCCTTATGGATGTGCTCCAATGGGTCG--------------- +>GOOSE_HONGKONG_W355_97 +ATGGAGAAAATAGTGCTTCTTCTTGCAACAGTCAGTCTTGTTAAAAGTGA +TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA +CAATAATGGAAAAGAATGTTACTGTTACACATGCCCAAGACATACTGGAA +AGGACACACAACGGGAAGCTCTGCGATCTAAATGGAGTGAAACCTCTCAT +TTTGAGGGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCTATGTGTG +ACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAGT +CCAGCCAATGACCTCTGTTATCCAGGGAATTTCAACGACTATGAAGAACT +GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC +CCAAAAGTTCTTGGTCCAATCATGATGCCTCATCAGGGGTTAGCTCAGCA +TGTCCATACCTTGGGAGGTCCTCCTTTTTCAGAAATGTGGTATGGCTTAT +CAAAAAGAACAGTGCATACCCAACAATAAAGAGGAGCTACAATAATACCA +ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG +GCAGAGCAGACAAAGCTTTATCAAAATCCAACCACCTACATTTCCGTTGG +AACATCAACACTGAACCAGAGATTGGTTCCAGAAATAGCTACTAGACCCA +AAGTAAACGGGCAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAG +CCGAATGATGCCATCAATTTCGAGAGTAATGGAAATTTCATTGCCCCAGA +ATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTG +AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG +ATAAACTCTAGTATGCCATTCCACAACATACACCCCCTCACCATCGGGGA +ATGCCCCAAATATGTGAAATCAAACAGATTAGTTCTTGCGACTGGACTCA +GAAATACCCCTCAAAGGGAGAGAAGAAGAAAAAAGAGAGGACTATTTGGA +GCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGCATGGTAGATGGTTG +GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACA +AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG +ATCATTAACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA +TAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAAATGGAAGACGGAT +TCCTAGATGTCTGGACTTACAATGCTGAACTTCTGGTTCTCATGGAAAAT +GAGAGAACTCTCGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA +GGTCCGACTACAGCTTAGGGATAATGCAAAGGAACTGGGTAATGGTTGTT +TCGAATTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAGAAAC +GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAACAGAGA +GGAAATAAGTGGAGTAAAATTGGAATCAATGGGAACTTACCAAATACTGT +CAATTTATTCAACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCT +GGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT +>DUCK_HONGKONG_Y283_97 +ATGGAGAAAATAGTGCTTCTTCTTGCAACAGTCAGTCTTGTTAAAAGTGA +TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA +CAATAATGGAAAAGAATGTTACTGTTACACATGCCCAAGACATACTGGAA +AGGACACACAACGGGAAGCTCTGCGATCTAAATGGAGTGAAACCTCTCAT +TTTGAGGGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCTATGTGTG +ACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAGT +CCAGCCAATGACCTCTGTTATCCAGGGAATTTCAACGACTATGAAGAACT +GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC +CCAAAAGTTCTTGGTCCAATCATGATGCCTCATCAGGGGTTAGCTCAGCA +TGTCCATACCTTGGGAGGTCCTCCTTTTTCAGAAATGTGGTATGGCTTAT +CAAAAAGAACAGTGCATACCCAACAATAAAGAGGAGCTACAATAATACCA +ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG +GCAGAGCAGACAAAGCTTTATCAAAATCCAACCACCTACATTTCCGTTGG +AACATCAACACTGAACCAGAGATTGGTTCCAGAAATAGCTACTAGACCCA +AAGTAAACGGGCAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAG +CCGAATGATGCCATCAATTTCGAGAGTAATGGAAATTTCATTGCCCCAGA +ATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTG +AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG +ATAAACTCTAGTATGCCATTCCACAACATACACCCCCTCACCATCGGGGA +ATGCCCCAAATATGTGAAATCAAACAGATTAGTTCTTGCGACTGGACTCA +GAAATACCCCTCAAAGGGAGAGAAGAAGAAAAAAGAGAGGACTATTTGGA +GCTATAGCAGGTTTTATAGAGGGAGGATGGCAG----------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +------------------------------------------------ +>DUCK_VIETNAM_376_2005 +ATGGAGAAAATAGTGCTTCTTTTTGCGATAGTCAGTCTTGTTAAAAGTGA +TCAGATTTGCATTGGTTACCATGCAAACAACTCAACAGAGCAGGTTGACA +CAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAA +AAGACACACAACGGGAAGCTCTGCGATCTAGATGGAGTGAAGCCTCTAAT +TTTGAGAGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCAATGTGTG +ACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAAT +CCAGTCAATGACCTCTGTTACCCAGGGGATTTCAATGACTATGAAGAATT +GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC +CCAAAAGTTCTTGGTCCAGTCATGAAGCCTCATTAGGAGTGAGCTCAGCA +TGTCCATACCAGGGAAATCCCTCCTTTTTCAGAAATGTGGTATGGCTTAT +CAAAAAGAACAGTACATACCCAACAATAAAGAGGAACTACAATAATACCA +ACCAAGAAGATCTTTTGGTAATGTGGGGGATTCACCATCCTAATGATGCG +GCAGAGCAGACAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGG +GACATCAACACTAAACCAGAGATTGGTACCAAGAATAGCTACTAGATCCA +AAATAAACGGGCAAAGTGGGAGGATAGAGTTCTTCTGGACAATTTTAAAA +CCGAATGATGCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGA +ATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTG +AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG +ATAAACTCTAGTATGCCATTCCACAATATACATCCTCTCACCATCGGGGA +GTGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGGCTCA +GAAATAGCCCTCAAAGAGAGAGAAGAAGAAAAAAGAGAGGATTATTTGGA +GCTATAGCAGGTTTTATAGAAGGAGGATGGCAAGGAATGGTAGATGGTTG +GTATGGGTACCACCATAGCAATGAGCAGGGAAGTGGGTACGCTGCAGACA +AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG +ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA +CAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGGT +TCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAAT +GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA +GGTCCGACTACAGCTTAGAGATAATGCAAAGGAGCTGGGTAACGGTTGTT +TCGAGTTCTATCATAAATGTGATAATGAATGTATGGAAAGTGTAAGAAAC +GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGATTAAAAAGAGA +GGAAATAAGTGGAGTAAAATTGGAATCAATAGGAATTTACCAAATACTGT +CAATTTATTCTACTGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCT +GGTCTATCCTTATGGATGTGCTCCAATGGGTCGTTACAATGCAGA--- +>MALLARD_VIETNAM_16_2003 +ATGGAGAAAATAGTGCTTCTTTTTGCAATAGTCAGTCTTGTTAAAAGTGA +TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA +CAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAA +AAGACACACAACGGGAAGCTCTGCGATCTAGATGGAGTGAAGCCTCTAAT +TTTGAGAGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCAATGTGTG +ACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAAT +CCAGTCAATGACCTCTGTTACCCAGGGGATTTCAATGAATATGAAGAATT +GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC +CCAAAAGTTCTTGGTCCAGTCATGAAGCCTCATTAGGGGTGAGCTCAGCA +TGTCCATACCAGGGAAAGTCCTCCTTTTTCAGAAATGTGGTATGGCTTGT +CAAAAAGAACAGTACATACCCAACAATAAAGAGGAGCTACAATAATACCA +ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG +GCAGAGCAGACAAAGCTCTATCAAAATCCAACCACCTACATTTCCGTTGG +GACATCAACACTAAACCAGAGATTGGTACCAAGAATAGCTACTAGATCCA +AAGTAAACGGGCAAAGTGGAAGGATGGAGTTCTTCTGGACAATTTTAAAA +CCGAATGATGCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGA +ATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTG +AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG +ATAAACTCTAGTATGCCATTCCACAATATACACCCCCTCACCATCGGGGA +ATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGGCTCA +GAAATAGCCCTCAAAGAGAGAGAAGAAGAAAAAAGAGAGGATTATTTGGA +GCTATAGCAGGTTTTATAGAGGGAGGATGGCAAGGAATGGTAGATGGTTG +GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGGTACGCTGCAGACA +AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG +ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA +CAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGGT +TCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAAT +GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA +GGTCCGACTACAGCTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTT +TCGAGTTCTATCATAAATGTGATAATGAATGTATGGAAAGTGTAAGAAAC +GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAAAAGAGA +GGAAATAAGTGGAGTAAAATTGGAATCAATAGGAATTTACCAAATACTGT +CAATTTATTCTACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCT +GGTCTATCCTTATGGATGTGCTCCAATGGGTCGTTACAATGCAGA--- +>CHICKEN_THAILAND_KANCHANABURI_CK_160_2005 +ATGGAGAAAATAGTGCTTCTTTTTGCAATAGTCAGTCTTGTTAAAAGTGA +TCAGATTTGCATTGGTTACCATGCAAACAACTCAACAGAGCAGGTTGACA +CAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAA +AAGACACACAACGGGAAGCTCTGTGATCTAGATGGAGTGAAGCCTCTAAT +TTTGAGAGATTGTAGTGTAGCTGGATGGCTCCTTGGAAACCCAATGTGTG +ATGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAAT +CCAGCCAATGACCTCTGTTACCCAGGGGATTTCAATGACTATGAAGAATT +GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC +CCAAAAGTTCTTGGTCCAGTCATGAAGCCTCATTAGGAGTGAGCTCAGCA +TGTCCATATCAGGGAAAGTCCTCCTTTTTCAGAAATGTGGTATGGCTTAT +CAAAAAGAACAGTACATACCCAACAATAAAGAGGAGCTACAATAATACCA +ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG +GCAGAGCAGACAAAGCTCTATCAAAACCCAACCACCTACATTTCCGTTGG +GACATCAACACTAAACCAGAGATTGGTACCAAGAATAGCTACTAGATCCA +AAGTAAACGGGCAAAGTGGAAGGATGGAGTTCTTCTGGACAATTTTAAAA +CCGAATGATGCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGA +ATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTG +AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG +ATAAACTCTAGTATGCCATTCCACAATATACACCCTCTCACCATCGGGGA +ATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGACTCA +GAAATAGCCCTCAAAGAGAGAAAAGAAGAAAAAAGAGAGGATTATTTGGA +GCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTG +GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGGTACGCTGCAGACA +AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG +ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA +CAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGGT +TCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAAT +GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA +GGTCCGACTACAGCTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTT +TCGAGTTCTATCATAAATGTGATAATGAATGTATGGAAAGTGTAAGGAAC +GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAAAAGAGA +GGAAATAAGTGGAGTAAAATTGGAATCAATAGGAATTTACCAAATACTGT +CAATTTATTCTACAGTAGCGAGTTCCCTAGCACTGGCAATCATGGTAGCT +GGTCTATCCTTATGGATGTGCTTCAATGGGTCGTTACAATGCAGAATT +>DUCK_GUANGZHOU_20_2005 +ATGGAGAAAATAGTGCTTCTTCTTGCAATAGTCAGTCTTGTTAAAAGTGA +TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA +CAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAA +AAGACACACAATGGGAAGCTCTGCGACCTAGATGGGGTGAAGCCTCTAAT +TTTGAGAGATTGTAGTGTAGCTGGATGGCTCCTCGGGAACCCAATGTGTG +ACGAATTCATCAATGTACCGGAATGGTCTTACATAGTGGAGAAGGCCAAT +CCAGCCAATGACCTCTGTTACCCAGGTGATTTCAACGATTATGAAGAACT +GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC +CCAAAAGTTCTTGGTCCAACCATGAATCCTCATCAGGGGTGAGCTCAGCA +TGTCCATACCTGGGAAAGCCCTCCTTTTTCAGAAATGTGGTATGGCTTAT +CAAAAAGAACAATGCATACCCAACAATAAAGAAGAGCTACAATAATACCA +ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG +ACAGAGCAGACAAAGCTCTATCAAAACCCAACCACTTATATTTCCGTTGG +AACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCTACCAGATCCA +AAGTAAACGGGCAAAGTGGAAGGATGGAGTTCTTCTGGACAATTTTAAAA +CCGAATGATGCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGA +ATATGCATACAAAATTGTCAAGAAAGGGGACTCAGCAATTATGAAAAGTG +AATTGGAATATGGTAACTGCAACACCAAATGTCAAACTCCAATGGGGGCG +ATAAACTCTAGTATGCCATTCCACAACATACACCCTCTCACCATCGGGGA +ATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGGCTCA +GAAATAGCCCTCAAAGGGAGAGAAGAAGAAAGAAGAGAGGACTATTTGGA +GCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTG +GTATGGATACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACA +AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG +ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA +TAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGAT +TCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAAT +GAGAGAACTCTAGACTTTCATGACTCAAATGTCAGGAACCTTTACGACAA +GGTCCGACTACAGCTTAGGGATAATGCAAAAGAGCTGGGTAACGGTTGTT +TCGAGTTCTATCACAAATGTGATGATGAATGCATGGAAAGTGTAAGAAAC +GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGGCTAAAAAGAGA +GGAAATAAGTGGAGTAAAATTGGAATCAATAGGAACTTACCAAATACTGT +CAATTTATTCAACAGTGGCAAGTTCCCTAGCGCTGGCAATCATGGTAGCT +GGTCTATCTTTATGGATGTGCTCCAATGGTTCGTTACAATGCAGAATT +>CK_HK_WF157_2003 +ATGGAGAAAATAGTGCTTCTTCTTGCAATAGTCAGTCTTGTTAAAAGTGA +TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA +CAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAA +AAGACCCACAACGGGAAGCTCTGCGACCTAGATGGAGTGAAGCCTCTAAT +TTTGAGAGATTGTAGTGTAGCTGGATGGCTCCTCGGGAACCCAATGTGTG +ACGAATTCATCAATGTACCGGAATGGTCTTACATAGTGGAGAAGGCCAGT +CCATCCAATGACCTCTGTTACCCAGGGGATTTCAACAATTATGAAGAACT +GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC +CCAAAAGCTCTTGGTCCAATCATGAAGCCTCATCAGGGGTGAGCTCAGCA +TGTCCATACCTGGGAAAGCCCTCCTTTTTCAGAAATGTGGTATGGCTTAT +CAAAAAGAACAGTACATACCCAACAATAAAGAGGAGCTACAATAATACCA +ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG +GCAGAGCAGATAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGG +AACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCTACTAGATCCA +AAGTAAACGGGCAAAGTGGAAGGATGGAGTTCTTCTGGACAATTTTAAAA +CCGAATGATGCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGA +ATATGCATACAAAATTGTCAAGAAAGGGGACTCAGCAATTATGAAAAGTG +AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG +ATAAACTCTAGTATGCCCTTCCACAACATACACCCTCTCACCATCGGGGA +ATGCCCCAAATATGTGAAATCAAACAGACTAGTCCTTGCGACTGGGCTCA +GAAATAGCCCTCAAAGAGAGAGAAGAAGAAAAAAGAGAGGACTATTTGGA +GCTATAGCGGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTG +GTATGGATACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACA +AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG +ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA +TAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGAT +TCCTAGATGTCTGGACTTATAATGCTGAACTTCTAGTTCTCATGGAAAAT +GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA +GGTCCGACTACAGCTTAGGGATAATGCAAAAGAGCTGGGTAACGGTTGTT +TCGAGTTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAGAAAC +GGAACGTATGACTACTCGCAGTATTCAGAAGAAGCAAGACTAAAAAGAGA +GGAAATAAGTGGAGTAAAATTGGAATCAATAGGAACTTACCAAATACTGT +CAATTTATTCAACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCT +GGTCTATCTTTATGGATGTGCTCCAATGGTTCGTTACAATGT------ +>SWINE_ANHUI_2004 +ATGGAGAAAATAGTGCTTCTTCTTGCAATAGTCAGTCTTGTTAAAGGTGA +TCAGATTTGCACTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA +CAATAATGGAAAAGAACGTTACTGTTACACATGCTCAAGACATACTGGAA +AAGACACACAACGGGAAGCTCTGCGACCTAGATGGAGTGAAGCCTCTAAT +TTTAAGAGATTGTAGTGTAGCTGGATGGCTCCTCGGGAACCCAATGTGTG +ACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAAT +CCAGCCAATGACCTCTGTTACCCAGGGGATTTCAACGACTATGAAGAACT +GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC +CCAAAAGTTCTTGGTCCGATCATGAAGCCTCATCAGGGGTGAGCTCAGCA +TGTCCATACCAGGGAAGGTCCTCCTTTTTCAGAAATGTGGTATGGCTTAT +CAAAAAGAACAGTGCATACCCAACAATAAAGAGGAGCTACAATAATACCA +ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCACCCTAATGATGCG +GCAGAGCAGATAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGG +GACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCTACTAGATCCA +AAGTAAACGGACAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAA +CCGAATGATGCTATCAATTTCGAGAGTAATGGAAATTTCATTGCTCCAGA +ATATGCATACAAAATTGTCAAGAAAGGGGACTCTGCAATTATGAAAAGTG +AATTGGAATATGGCAACTGCAACACCAAGTGTCAAACTCCAGTGGGGGCG +ATAAATTCTAGCATGCCATTCCACAACATACACCCTCTCACCATCGGGGA +ATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGACTCA +GAAATGCCCCTCAAAGAGAGGGAAGAAGAAAAAAGAGAGGACTATTTGGA +GCTATAGCAGGGTTTATAGAGGGAGGATGGCAGGGGATGGTAGATGGTTG +GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACA +AAGAATCCACTCAAAAAGCAATAGATGGAGTCACCAATAAGGTCAACTCG +ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA +TAACTTAGAAAGGAGAATAGAAAATTTAAACAAGAAGATGGAGGACGGAT +TCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAAT +GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA +GGTCCGACTACAGCTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTT +TCGAGTTCTATCACAGATGTGATAATGAATGTATGGAAAGTGTAAGAAAC +GGAACGTATGACTACCCGCAGTATTCGGAAGAAGCAAGACTAAACAGAGA +GGAAATAAGTGGAGTAAAATTGGAATCAATAGGAACTTACCAAATACTGT +CAATTTATTCAACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTGGCT +GGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT +>DUCK_VIETNAM_272_2005 +ATGGAGAAAATAGTGCTTCTTTTTGCAATAGTCAGTCTTGTTAAAAGTGA +TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA +CAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAA +AAGACACACAACGGGAAGCTCTGCGATCTAGATGGAGTGAAGCCTCTAAT +TTTGAGAGATTGTAGTGTAGCTGGATGGCTCCTTGGAAATCCAATGTGTG +ACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAAT +CCAGTCAATGACCTCTGTTACCCAGGGGATTTCAATGACTATGAAGAATT +GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC +CCAAAAGTTCTTGGCCCAGTCATGAAGCCTCATTAGGGGTGAGCTCAGCA +TGTCCATACCAGGGAAGGTCCTCCTTTTTCAGAAATGTGGTATGGCTTAT +CAAAAAGAACAGTACATATCCAACAATAAAGAGGAGCTACAATAATACCA +ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG +GCAGAGCAGACAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGG +GACATCAACACTAAACCAGAGATTGATACCAAGAATAGCTACTAGATCCA +AAGTAAACGGGCAAAGTGGAAGGATGGAGTTCTTCTGGACAATTTTAAAA +CCGAATGATGCAATCAATTTCGAGAGTAATGGAAATTTCATTGCCCCAGA +ATACGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTG +AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACACCAATGGGGGCG +ATAAATTCTAGTATGCCATTCCACAATATACACCCTCTCACCATCGGGGA +ATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGGCTCA +GAAATAGCCCTCAAAGAGAGAGAAGA---AAAAAGAGAGGATTATTTGGA +GCTATAGCAGGTTTTATAGAGGGGGGATGGCAGGGAATGGTAGATGGTTG +GTATGGGTACCACCATAGCAATGAACAGGGGAGTGGGTACGCTGCAGACA +AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG +ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA +CAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGGT +TCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAAT +GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA +GGTCCGACTACAGCTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTT +TCGAGTTCTATCATAAATGTGATAATGAATGTATGGAAAGTGTAAGAAAT +GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAAACTAAAAAGAGA +GGAAATAAGTGGAGTAAAATTGGAATCAATAGGAATTTACCAAATACTGT +CAATTTATTCCACAGTAGCGAGTTCCCTAGCACTGGCAATCATGGTAGCT +GGTCTATCCTTATGGATGTGCTCCAATGGGTCGTTACAATGCAGA--- +>HONGKONG_97_98 +------------------------------------------------GA +CCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGATA +CAATAATGGAAAAGAATGTTACTGTTACACATGCCCAAGACATACTGGAA +AGGACACACGACGGGAAGCTCTGCGATCTAAATGGAGTGAAACCTCTCAT +TTTGAGGGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCTATGTGTG +ACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAGT +CCAGCCAATGACCTCTGTTATCCAGGGAATTTCAACGACTATGAAGAACT +GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC +CCAAAAGTTCTTGGTCCAATCATGATGCCTCATCAGGGGTGAGCTCAGCA +TGTCCATACCTTGGGAGGTCCTCCTTTTTCAGAAATGTGGTATGGCTTAT +CAAAAAGAACAGTGCATACCCAACAATAAAGAGGAGCTACAATAATACCA +ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG +GCAGAGCAGACAAAGCTCTATCAAAATCCAACCACCTACATTTCCGTTGG +AACATCAACACTGAATCAGAGATTGGTTCCAGAAATAGCTACTAGACCCA +AAGTAAACGGGCAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAG +CCGAATGATGCCATCAATTTCGAGAGTAATGGAAATTTCATTGCCCCAGA +ATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTG +AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG +ATAAACTCTAGTATGCCATTCCACAACATACACCCCCTCACCATCGGGGA +ATGCCCCAAATATGTGAAATCAAACAGATTAGTTCTTGCGACTGGACTCA +GAAATACCCCTCATAGGGAGAGAAGAAGAAAAAAGAGAGGACTATTTGGA +GCTATAGCAGGTTTTATAGAAGGAGGATGGCAGGGAATGGTAGATGGTTG +GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACC +AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG +ATCATTAACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA +TAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAAATGGAAGACGGAT +TCCTAGATGTCTGGACTTACAATGCTGAACTTCTGGTTCTCATGGAAAAT +GAGAGAACTCTCGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA +GGTCCGACTACAGCTTAGGGATAATGCAAAGGAACTGGGTAATGGTTGTT +TCGAATTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAAAAAC +GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAACAGAGA +GGAAATAAGTGGAGTAAAATTGGAATCAATGGGAACTTACCAAATACTGT +CAATTTATTCAACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCT +GGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT +>GOOSE_SHANTOU_2216_2005 +ATGGAGAAAATAGTGCTTCTTCTTGCAATAATCAGCCTTGTTAAAAGTGA +TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA +CAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAA +AAGACACACAATGGGAAGCTCTGCGACTTAGATGGGGTGAAGCCTCTAAT +TTTGAGAGACTGTAGTGTAGCTGGATGGCTCCTCGGGAACCCAATGTGTG +ACGAATTCATCAATGTACCGGAATGGTCTTACATAGTGGAGAAGGCCAGT +CCAGCCAATGACCTCTGTTACCCAGGTGATTTCAACGATTATGAAGAACT 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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/gard-out1.nex Mon Feb 18 15:14:26 2019 -0500 @@ -0,0 +1,53 @@ +#NEXUS + +BEGIN TAXA; + DIMENSIONS NTAX = 21; + TAXLABELS + 'TREESPARROW_HENAN_1_2004' 'HUMAN_VIETNAM_CL105_2005' 'TREESPARROW_HENAN_4_2004' 'CHICKEN_HEBEI_326_2005' 'CHICKEN_HONGKONG_915_97' 'VIETNAM_3062_2004' 'GOOSE_HONGKONG_W355_97' 'DUCK_HONGKONG_Y283_97' 'DUCK_VIETNAM_376_2005' 'MALLARD_VIETNAM_16_2003' 'CHICKEN_THAILAND_KANCHANABURI_CK_160_2005' 'DUCK_GUANGZHOU_20_2005' 'CK_HK_WF157_2003' 'SWINE_ANHUI_2004' 'DUCK_VIETNAM_272_2005' 'HONGKONG_97_98' 'GOOSE_SHANTOU_2216_2005' 'TREESPARROW_HENAN_3_2004' 'PEREGRINEFALCON_HK_D0028_2004' 'TREESPARROW_HENAN_2_2004' 'HONGKONG_538_97' ; +END; + +BEGIN CHARACTERS; + DIMENSIONS NCHAR = 1698; + FORMAT + DATATYPE = DNA + GAP=- + MISSING=? + NOLABELS + ; + +MATRIX + ATGGAGAAAATAGTGCTTCTTCGTGCAATGATCAATCTTGTTAAAAGTGATCAGATTGGCGTTGGTTACCATGCAGACTACTCGACAGAGCAGGGTGACACAATAATGGAAAAGAACGTTACTGTTACACATGCTCAAGACATATTGGAAAAGACACACAACGGGAAGCTCTGCGACCTAGATGGAGTGAAGCCTCTAATTTTGAAAGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCAATGTGTGACGAATTCATCAATGTGCCGGAGTGGTCTTACATAGTGGAGAAGGCCAGTCCAGCCAATGACCTCTGTTACCCAGGGGATTTCAACGACTATGAAGAACTGAAACACCTATTGAGCAGAATAAACCATTTTGAAAAAATTCAGATCATCCCCAAAAGTTCTTGGTCCGATCATGAAGCCTCATCAGGGGTGAGCTCAGCATGTCCATACCTGGGGAAGCCCTCCTTTTTCAGAAATGTGGTATGGCTTATCAAAAAGAACAGTACATACCCAACAATAAAGAGGGGCTACAATAATACCAACCCAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCGGCAGAGCAGATAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGGAACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCTACTAGATCCAAAGTAAATGGGCAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAGCCGAATGACGCTATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGAATATGCATACCAAATTGTCAAGAAAGGGGACTCAGCAATTATGAAAAGTGAATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCGATAAACTCTAGTATGCCATTCCACAACATACACCCTCTCACCATCGGGGAATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACAGGGCTCAGAAATAGCCCTCAAAGAGAGAGAAGAAGAAAAAAGAGAGGACTATTTGGAGCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTGGTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACAAAGAATCCACTCAAAAAGCAATAGATGGAGTCACCAATAAGGTCAACTCGATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAATAACTTAGAAAGGAGAATAGAAAATTTAAACAAGAAGATGGAGGACGGATTCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAATGAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGAAAAGGTCCGACTACAACTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTTTCGAGTTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAAAAACGGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAACAGAGAGGAAATAAGTGGAGTAAAATTGGAATCAATAGGAACTTACCAAATACTGTCAATTTATTCAACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCTGGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT + ATGGAGAAAATAGTGCTTCTTTTTGCGATAGTCAGTCTTGTTAAAAGTGATCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACACAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAAAAGACACACAACGGGAAGCTCTGCGATCTAGATGGAGTGAAGCCTCTAATTTTGAGAGATTGTAGTGTAGCTGGATGGCTACTCGGAAACCCAATGTGTGACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGTCAATCCAGTCAATGACCTCTGTTACCCAGGGGTTTTCAATGACTATGAAGAATTGAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCCCCAAAAGTTCTTGGTCCAGTCATGAAGCCTCATTAGGGGTGAGCTCAGTATGTCCATACCAGGGAAAGTCCTCCTTTTTCAGAAATGTGGTATGGCTTATCAAAAAGAACAGTACATACCCAACAATAAAGAGGAGCTACAATAATACCAACCAAGAAGATCTTTTGGTAATATGGGGGATTCATCATCCTAATGATGCGGCAGAGCAGATAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGGGACATCAACACTAAACCAGAGATTGGTACCAAGAATAGCTACTAGATCCAAAGTAAACGGGCAAAGTGGGAGGATGGAGTTCTTCTGGACAATTTTAAAACCGAATGATGCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGAATATGCATACAAGATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTGAATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCGATAAACTCTAGTATGCCATTCCACAATATACACCCTCTCACCATCGGGGAATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGGCTCAGAAATAGCCCTCAAAAAGAGAGAAGAAGAAAAAAGAGAGGATTATTTGGAGCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTGGTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGGTACGCTGCAGACAAAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCGATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAACAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGGTTCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAATGAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAAGGTCCGACTACAGCTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTTTCGAGTTCTATCATAAATGTGATAATGAATGTATGGAAAGTGTAAGAAACGGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGATTAAAAAGAGAGGAAATAAGTGGAGTAAAATTGGAATCAATAGGAATTTACCAAATACTGTCAATTTATTCTACAGTGGCGAGTTCCCTAGCACTGGCAATCATGATAGCTGGTCTATCCTTATGGATGTGCTCCAATGGGTCGTTACAA--------- + ATGGAGAAAATAGTGCTTCTTCTTGCAATAGTCAGTCTTGTTAAAAGTGATCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACACAATAATGCAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAAAAGACACACAACGGGAAGCTCTGCGATCTAGATGGAGTGAAACCTCTAATTTTAAGAGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCAATGTGTGACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAGTCCAGCCAATGACCTCTGTTACCCAGGGGATTTCAACGACTATGAAGAACTGAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCCCCAAAAGTTCTTGGTCCGATCATGAAGCCTCATCAGGGGTGAGCTCAGCATGTCCATACCAGGGGAGTCCCTCCTTTTTCAGAAATGTGGTATGGCTTATCAAAAAGAACAGTGCATACCCAACAATAAAGAGGAGCTACAATAATACCAACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCGGCAGAGCAGACAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGGAACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCTACTAGATCCAAAGTAAATGGGCAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAGCCGAATGACGCTATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGAATATGCATACAAAATTGTCAAGAAAGGGGACTCAGCAATTATGAAAAGTGAATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCGATAAACTCTAGTATGCCATTCCACAACATACACCCTCTCACCATCGGGGAATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACAGGGCTCAGAAATAGCCCTCAAAGAGAGAGAAGAAGAAAAAAGAGAGGACTATTTGGAGCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTGGTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACAAAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCGATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAATAACTTAGAAAGGAGAATAGAAAATTTAAACAAGAAGATGGAGGACGGATTCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAATGAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGAAAAGGTCCGACTACAACTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTTTCGAGTTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAAAAACGGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAACAGAGAGGAAATAAGTGGAGTAAAATTGGAATCAATAGGAACTTACCAAATACTGTCAATTTATTCAACAGTGGTGAGTTCCCTAGCACTGGCAATCATGGTAGCTGGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT + ATGGAGAGAATAGTGCTTCTTCTTGCAATAATCGGTCTTGTTAAAAGTGATCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACACAATAATGGAAAAGAACGTTACTGTTACACATGCTCAAGACATACTGGAGAAGACACACAACGGGAAGCTCTGCAACCCAGATGGAGTGAAGCCTCTAATTTTGAAAGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCAATGTGTGACGAATTTATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAGTCCAGCCAATGGCCTCTGTTACCCAGGGGATTTCAATGACTATGAAGAACTGAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCCCCAAAAGTTCTTGGTCCGATCATGGAGCCTCATCAGGGGTGAGCTCAGCATGTTCCTATCTGGGGAAGCCCTCCTTTTTCAGAAATGTGGTATGGCTTATCAAAAAGAATAATACATACCCACCAATAAAGGTGAGCTACAACAATACCAACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCCAATGATGAGGCAGAGCAGATAAAGATCTATCAAAACCCAACCACCTATATTTCCGTTGGAACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCTACTAGATCCAAAGTAAACGGGCAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAGCCGAATGATGCTATCAATTTCGATAGTAATGGAAATTTCATTGCTCCAGAATATGCATACAAAATTGTCAAGAAAGGGGACTCAGCGATTATGAAAAGTGAATTGGAATATGGCAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCGATAAATTCTAGTATGCCATTCCACAACATACACCCTCTCACCGTCGGGGAATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTCGCGACTGGACTCAGAAATGCCCCTCAAAGAGAGGGAGGAAGAAAAAAGAGAGGACTATTTGGAGCCATAGCAGGGTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTGGTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACAAAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCGATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAATAACTTAGAAAGGAGAATAGAAAATTTAAACAAGAAGATGGAGGACGGATTCCTAGATGTCTGGACTTATAACGCTGAACTTCTGGTTCTCATGGAAAATGAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGAAAAGGTCCGACTACAGCTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTTTCGAGTTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAAAAACGGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAACAGAGAGGAAATAAGTGGAGTAAAATTGGAATCAATGGGAACTTACCAAATACTGTCAATTTATTCAACAGTGGCGAGTTCCCTAGCATTGGCAATCATGGTAGCTGGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT + ATGGAGAAAATAGTGCTTCTTCTTGCAACAGTCAGTCTTGTTAAAAGTGATCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACACAATAATGGAAAAGAATGTTACTGTTACACATGCCCAAGACATACTGGAAAGGACACACAACGGGAAGCTCTGCGATCTAAATGGAGTGAAACCTCTCATTTTGAGGGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCTATGTGTGACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAGTCCAGCCAATGACCTCTGTTATCCAGGGAATTTCAACGACTATGAAGAACTGAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCCCCAAAAGTTCTTGGTCCAATCATGATGCCTCATCAGGGGTGAGCTCAGCATGTCCATACCTTGGGAGGTCCTCCTTTTTCAGAAATGTGGTATGGCTTATCAAAAAGAACAGTGCATACCCAACAATAAAGAGGAGCTACAATAATACCAACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCGGCAGAGCAGACAAAGCTCTATCAAAATCCAACCACCTACATTTCCGTTGGAACATCAACACTGAACCAGAGATTGGTTCCAGAAATAGCTACTAGACCCAAAGTAAACGGGCAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAGCCGAATGATGCCATCAATTTCGAGAGTAATGGAAATTTCATTGCCCCAGAATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTGAATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCGATAAACTCTAGTATGCCATTCCACAACATACACCCCCTCACCATCGGGGAATGCCCCAAATATGTGAAATCAAACAGATTAGTTCTTGCGACTGGACTCAGAAATACCCCTCAAAGGGAGAGAAGAAGAAAAAAGAGAGGACTATTTGGAGCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGCATGGTAGATGGTTGGTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACAAAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCGATCATTAACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAATAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAAATGGAAGACGGATTCCTAGATGTCTGGACTTACAATGCTGAACTTCTGGTTCTCATGGAAAATGAGAGAACTCTCGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAAGGTCCGACTACAGCTTAGGGATAATGCAAAGGAACTGGGTAATGGTTGTTTCGAATTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAAAAACGGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAACAGAGAGGAAATAAGTGGAGTAAAATTGGAATCAATGGGAACTTACCAAATACTGTCAATTTATTCAACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCTGGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT + ATGGAGAAAATAGTGCTTCTTTTTGCAATAGTCAGTCTTGTTAAAAGTGATCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACACAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAAAAGACACACAACGGGAAGCTCTGCGATCTAGATGGAGTGAAGCCTCTAATTTTGAGAGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCAATGTGTGACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAATCCAGTCAATGACCTCTGTTACCCAGGGGATTTCAATGACTATGAAGAATTGAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCCCCAAAAGTTCTTGGTCCAGTCATGAAGCCTCATTAGGAGTGAGCTCAGCATGTCCATACCAGGGAAAGTCCTCCTTTTTCAGAAATGTGGTATGGCTTATCAAAAAGAACAGTACATACCCAACAATAAAGAGGAGCTACAATAATACCAACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCGGCAGAGCAGACAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGGGACATCAACACTAAACCAGAGGTTGGTACCAAGAATAGCTACTAGATCCAAAGTAAACGGGCAAAGTGGAAGGATGGAGTTCTTCTGGACAATTTTAAAACCGAATGATGCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGAATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTGAATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCGATAAACTCTAGTATGCCATTCCACAATATACACCCTCTCACCATCGGGGAATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGGCTCAGAAATAGCCCTCAAAGAGAGAGAAGAAGAAAAAAGAGAGGATTATTTGGAGCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTGGTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGGTACGCTGCAGACAAAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCGATCATTGACAAAATGAACACTCAATTTGAGGCCGTTGGAAGGGAATTTAACAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGGTTCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAATGAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAAGGTCCGACTACAGCTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTTTCGAGTTCTATCATAAATGTGATAATGAATGTATGGAAAGTGTAAGAAACGGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAAAAGAGAGGAAATAAGTGGAGTAAAATTGGAATCAATAGGAATTTACCAAATACTGTCAATTTATTCTACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCTGGTCTATCCTTATGGATGTGCTCCAATGGGTCG--------------- + ATGGAGAAAATAGTGCTTCTTCTTGCAACAGTCAGTCTTGTTAAAAGTGATCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACACAATAATGGAAAAGAATGTTACTGTTACACATGCCCAAGACATACTGGAAAGGACACACAACGGGAAGCTCTGCGATCTAAATGGAGTGAAACCTCTCATTTTGAGGGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCTATGTGTGACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAGTCCAGCCAATGACCTCTGTTATCCAGGGAATTTCAACGACTATGAAGAACTGAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCCCCAAAAGTTCTTGGTCCAATCATGATGCCTCATCAGGGGTTAGCTCAGCATGTCCATACCTTGGGAGGTCCTCCTTTTTCAGAAATGTGGTATGGCTTATCAAAAAGAACAGTGCATACCCAACAATAAAGAGGAGCTACAATAATACCAACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCGGCAGAGCAGACAAAGCTTTATCAAAATCCAACCACCTACATTTCCGTTGGAACATCAACACTGAACCAGAGATTGGTTCCAGAAATAGCTACTAGACCCAAAGTAAACGGGCAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAGCCGAATGATGCCATCAATTTCGAGAGTAATGGAAATTTCATTGCCCCAGAATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTGAATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCGATAAACTCTAGTATGCCATTCCACAACATACACCCCCTCACCATCGGGGAATGCCCCAAATATGTGAAATCAAACAGATTAGTTCTTGCGACTGGACTCAGAAATACCCCTCAAAGGGAGAGAAGAAGAAAAAAGAGAGGACTATTTGGAGCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGCATGGTAGATGGTTGGTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACAAAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCGATCATTAACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAATAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAAATGGAAGACGGATTCCTAGATGTCTGGACTTACAATGCTGAACTTCTGGTTCTCATGGAAAATGAGAGAACTCTCGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAAGGTCCGACTACAGCTTAGGGATAATGCAAAGGAACTGGGTAATGGTTGTTTCGAATTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAGAAACGGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAACAGAGAGGAAATAAGTGGAGTAAAATTGGAATCAATGGGAACTTACCAAATACTGTCAATTTATTCAACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCTGGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT + ATGGAGAAAATAGTGCTTCTTCTTGCAACAGTCAGTCTTGTTAAAAGTGATCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACACAATAATGGAAAAGAATGTTACTGTTACACATGCCCAAGACATACTGGAAAGGACACACAACGGGAAGCTCTGCGATCTAAATGGAGTGAAACCTCTCATTTTGAGGGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCTATGTGTGACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAGTCCAGCCAATGACCTCTGTTATCCAGGGAATTTCAACGACTATGAAGAACTGAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCCCCAAAAGTTCTTGGTCCAATCATGATGCCTCATCAGGGGTTAGCTCAGCATGTCCATACCTTGGGAGGTCCTCCTTTTTCAGAAATGTGGTATGGCTTATCAAAAAGAACAGTGCATACCCAACAATAAAGAGGAGCTACAATAATACCAACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCGGCAGAGCAGACAAAGCTTTATCAAAATCCAACCACCTACATTTCCGTTGGAACATCAACACTGAACCAGAGATTGGTTCCAGAAATAGCTACTAGACCCAAAGTAAACGGGCAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAGCCGAATGATGCCATCAATTTCGAGAGTAATGGAAATTTCATTGCCCCAGAATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTGAATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCGATAAACTCTAGTATGCCATTCCACAACATACACCCCCTCACCATCGGGGAATGCCCCAAATATGTGAAATCAAACAGATTAGTTCTTGCGACTGGACTCAGAAATACCCCTCAAAGGGAGAGAAGAAGAAAAAAGAGAGGACTATTTGGAGCTATAGCAGGTTTTATAGAGGGAGGATGGCAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- + ATGGAGAAAATAGTGCTTCTTTTTGCGATAGTCAGTCTTGTTAAAAGTGATCAGATTTGCATTGGTTACCATGCAAACAACTCAACAGAGCAGGTTGACACAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAAAAGACACACAACGGGAAGCTCTGCGATCTAGATGGAGTGAAGCCTCTAATTTTGAGAGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCAATGTGTGACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAATCCAGTCAATGACCTCTGTTACCCAGGGGATTTCAATGACTATGAAGAATTGAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCCCCAAAAGTTCTTGGTCCAGTCATGAAGCCTCATTAGGAGTGAGCTCAGCATGTCCATACCAGGGAAATCCCTCCTTTTTCAGAAATGTGGTATGGCTTATCAAAAAGAACAGTACATACCCAACAATAAAGAGGAACTACAATAATACCAACCAAGAAGATCTTTTGGTAATGTGGGGGATTCACCATCCTAATGATGCGGCAGAGCAGACAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGGGACATCAACACTAAACCAGAGATTGGTACCAAGAATAGCTACTAGATCCAAAATAAACGGGCAAAGTGGGAGGATAGAGTTCTTCTGGACAATTTTAAAACCGAATGATGCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGAATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTGAATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCGATAAACTCTAGTATGCCATTCCACAATATACATCCTCTCACCATCGGGGAGTGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGGCTCAGAAATAGCCCTCAAAGAGAGAGAAGAAGAAAAAAGAGAGGATTATTTGGAGCTATAGCAGGTTTTATAGAAGGAGGATGGCAAGGAATGGTAGATGGTTGGTATGGGTACCACCATAGCAATGAGCAGGGAAGTGGGTACGCTGCAGACAAAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCGATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAACAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGGTTCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAATGAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAAGGTCCGACTACAGCTTAGAGATAATGCAAAGGAGCTGGGTAACGGTTGTTTCGAGTTCTATCATAAATGTGATAATGAATGTATGGAAAGTGTAAGAAACGGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGATTAAAAAGAGAGGAAATAAGTGGAGTAAAATTGGAATCAATAGGAATTTACCAAATACTGTCAATTTATTCTACTGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCTGGTCTATCCTTATGGATGTGCTCCAATGGGTCGTTACAATGCAGA--- + ATGGAGAAAATAGTGCTTCTTTTTGCAATAGTCAGTCTTGTTAAAAGTGATCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACACAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAAAAGACACACAACGGGAAGCTCTGCGATCTAGATGGAGTGAAGCCTCTAATTTTGAGAGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCAATGTGTGACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAATCCAGTCAATGACCTCTGTTACCCAGGGGATTTCAATGAATATGAAGAATTGAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCCCCAAAAGTTCTTGGTCCAGTCATGAAGCCTCATTAGGGGTGAGCTCAGCATGTCCATACCAGGGAAAGTCCTCCTTTTTCAGAAATGTGGTATGGCTTGTCAAAAAGAACAGTACATACCCAACAATAAAGAGGAGCTACAATAATACCAACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCGGCAGAGCAGACAAAGCTCTATCAAAATCCAACCACCTACATTTCCGTTGGGACATCAACACTAAACCAGAGATTGGTACCAAGAATAGCTACTAGATCCAAAGTAAACGGGCAAAGTGGAAGGATGGAGTTCTTCTGGACAATTTTAAAACCGAATGATGCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGAATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTGAATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCGATAAACTCTAGTATGCCATTCCACAATATACACCCCCTCACCATCGGGGAATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGGCTCAGAAATAGCCCTCAAAGAGAGAGAAGAAGAAAAAAGAGAGGATTATTTGGAGCTATAGCAGGTTTTATAGAGGGAGGATGGCAAGGAATGGTAGATGGTTGGTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGGTACGCTGCAGACAAAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCGATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAACAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGGTTCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAATGAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAAGGTCCGACTACAGCTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTTTCGAGTTCTATCATAAATGTGATAATGAATGTATGGAAAGTGTAAGAAACGGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAAAAGAGAGGAAATAAGTGGAGTAAAATTGGAATCAATAGGAATTTACCAAATACTGTCAATTTATTCTACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCTGGTCTATCCTTATGGATGTGCTCCAATGGGTCGTTACAATGCAGA--- + ATGGAGAAAATAGTGCTTCTTTTTGCAATAGTCAGTCTTGTTAAAAGTGATCAGATTTGCATTGGTTACCATGCAAACAACTCAACAGAGCAGGTTGACACAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAAAAGACACACAACGGGAAGCTCTGTGATCTAGATGGAGTGAAGCCTCTAATTTTGAGAGATTGTAGTGTAGCTGGATGGCTCCTTGGAAACCCAATGTGTGATGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAATCCAGCCAATGACCTCTGTTACCCAGGGGATTTCAATGACTATGAAGAATTGAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCCCCAAAAGTTCTTGGTCCAGTCATGAAGCCTCATTAGGAGTGAGCTCAGCATGTCCATATCAGGGAAAGTCCTCCTTTTTCAGAAATGTGGTATGGCTTATCAAAAAGAACAGTACATACCCAACAATAAAGAGGAGCTACAATAATACCAACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCGGCAGAGCAGACAAAGCTCTATCAAAACCCAACCACCTACATTTCCGTTGGGACATCAACACTAAACCAGAGATTGGTACCAAGAATAGCTACTAGATCCAAAGTAAACGGGCAAAGTGGAAGGATGGAGTTCTTCTGGACAATTTTAAAACCGAATGATGCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGAATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTGAATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCGATAAACTCTAGTATGCCATTCCACAATATACACCCTCTCACCATCGGGGAATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGACTCAGAAATAGCCCTCAAAGAGAGAAAAGAAGAAAAAAGAGAGGATTATTTGGAGCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTGGTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGGTACGCTGCAGACAAAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCGATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAACAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGGTTCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAATGAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAAGGTCCGACTACAGCTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTTTCGAGTTCTATCATAAATGTGATAATGAATGTATGGAAAGTGTAAGGAACGGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAAAAGAGAGGAAATAAGTGGAGTAAAATTGGAATCAATAGGAATTTACCAAATACTGTCAATTTATTCTACAGTAGCGAGTTCCCTAGCACTGGCAATCATGGTAGCTGGTCTATCCTTATGGATGTGCTTCAATGGGTCGTTACAATGCAGAATT + ATGGAGAAAATAGTGCTTCTTCTTGCAATAGTCAGTCTTGTTAAAAGTGATCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACACAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAAAAGACACACAATGGGAAGCTCTGCGACCTAGATGGGGTGAAGCCTCTAATTTTGAGAGATTGTAGTGTAGCTGGATGGCTCCTCGGGAACCCAATGTGTGACGAATTCATCAATGTACCGGAATGGTCTTACATAGTGGAGAAGGCCAATCCAGCCAATGACCTCTGTTACCCAGGTGATTTCAACGATTATGAAGAACTGAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCCCCAAAAGTTCTTGGTCCAACCATGAATCCTCATCAGGGGTGAGCTCAGCATGTCCATACCTGGGAAAGCCCTCCTTTTTCAGAAATGTGGTATGGCTTATCAAAAAGAACAATGCATACCCAACAATAAAGAAGAGCTACAATAATACCAACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCGACAGAGCAGACAAAGCTCTATCAAAACCCAACCACTTATATTTCCGTTGGAACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCTACCAGATCCAAAGTAAACGGGCAAAGTGGAAGGATGGAGTTCTTCTGGACAATTTTAAAACCGAATGATGCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGAATATGCATACAAAATTGTCAAGAAAGGGGACTCAGCAATTATGAAAAGTGAATTGGAATATGGTAACTGCAACACCAAATGTCAAACTCCAATGGGGGCGATAAACTCTAGTATGCCATTCCACAACATACACCCTCTCACCATCGGGGAATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGGCTCAGAAATAGCCCTCAAAGGGAGAGAAGAAGAAAGAAGAGAGGACTATTTGGAGCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTGGTATGGATACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACAAAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCGATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAATAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGATTCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAATGAGAGAACTCTAGACTTTCATGACTCAAATGTCAGGAACCTTTACGACAAGGTCCGACTACAGCTTAGGGATAATGCAAAAGAGCTGGGTAACGGTTGTTTCGAGTTCTATCACAAATGTGATGATGAATGCATGGAAAGTGTAAGAAACGGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGGCTAAAAAGAGAGGAAATAAGTGGAGTAAAATTGGAATCAATAGGAACTTACCAAATACTGTCAATTTATTCAACAGTGGCAAGTTCCCTAGCGCTGGCAATCATGGTAGCTGGTCTATCTTTATGGATGTGCTCCAATGGTTCGTTACAATGCAGAATT + ATGGAGAAAATAGTGCTTCTTCTTGCAATAGTCAGTCTTGTTAAAAGTGATCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACACAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAAAAGACCCACAACGGGAAGCTCTGCGACCTAGATGGAGTGAAGCCTCTAATTTTGAGAGATTGTAGTGTAGCTGGATGGCTCCTCGGGAACCCAATGTGTGACGAATTCATCAATGTACCGGAATGGTCTTACATAGTGGAGAAGGCCAGTCCATCCAATGACCTCTGTTACCCAGGGGATTTCAACAATTATGAAGAACTGAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCCCCAAAAGCTCTTGGTCCAATCATGAAGCCTCATCAGGGGTGAGCTCAGCATGTCCATACCTGGGAAAGCCCTCCTTTTTCAGAAATGTGGTATGGCTTATCAAAAAGAACAGTACATACCCAACAATAAAGAGGAGCTACAATAATACCAACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCGGCAGAGCAGATAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGGAACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCTACTAGATCCAAAGTAAACGGGCAAAGTGGAAGGATGGAGTTCTTCTGGACAATTTTAAAACCGAATGATGCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGAATATGCATACAAAATTGTCAAGAAAGGGGACTCAGCAATTATGAAAAGTGAATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCGATAAACTCTAGTATGCCCTTCCACAACATACACCCTCTCACCATCGGGGAATGCCCCAAATATGTGAAATCAAACAGACTAGTCCTTGCGACTGGGCTCAGAAATAGCCCTCAAAGAGAGAGAAGAAGAAAAAAGAGAGGACTATTTGGAGCTATAGCGGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTGGTATGGATACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACAAAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCGATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAATAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGATTCCTAGATGTCTGGACTTATAATGCTGAACTTCTAGTTCTCATGGAAAATGAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAAGGTCCGACTACAGCTTAGGGATAATGCAAAAGAGCTGGGTAACGGTTGTTTCGAGTTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAGAAACGGAACGTATGACTACTCGCAGTATTCAGAAGAAGCAAGACTAAAAAGAGAGGAAATAAGTGGAGTAAAATTGGAATCAATAGGAACTTACCAAATACTGTCAATTTATTCAACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCTGGTCTATCTTTATGGATGTGCTCCAATGGTTCGTTACAATGT------ + ATGGAGAAAATAGTGCTTCTTCTTGCAATAGTCAGTCTTGTTAAAGGTGATCAGATTTGCACTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACACAATAATGGAAAAGAACGTTACTGTTACACATGCTCAAGACATACTGGAAAAGACACACAACGGGAAGCTCTGCGACCTAGATGGAGTGAAGCCTCTAATTTTAAGAGATTGTAGTGTAGCTGGATGGCTCCTCGGGAACCCAATGTGTGACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAATCCAGCCAATGACCTCTGTTACCCAGGGGATTTCAACGACTATGAAGAACTGAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCCCCAAAAGTTCTTGGTCCGATCATGAAGCCTCATCAGGGGTGAGCTCAGCATGTCCATACCAGGGAAGGTCCTCCTTTTTCAGAAATGTGGTATGGCTTATCAAAAAGAACAGTGCATACCCAACAATAAAGAGGAGCTACAATAATACCAACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCACCCTAATGATGCGGCAGAGCAGATAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGGGACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCTACTAGATCCAAAGTAAACGGACAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAACCGAATGATGCTATCAATTTCGAGAGTAATGGAAATTTCATTGCTCCAGAATATGCATACAAAATTGTCAAGAAAGGGGACTCTGCAATTATGAAAAGTGAATTGGAATATGGCAACTGCAACACCAAGTGTCAAACTCCAGTGGGGGCGATAAATTCTAGCATGCCATTCCACAACATACACCCTCTCACCATCGGGGAATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGACTCAGAAATGCCCCTCAAAGAGAGGGAAGAAGAAAAAAGAGAGGACTATTTGGAGCTATAGCAGGGTTTATAGAGGGAGGATGGCAGGGGATGGTAGATGGTTGGTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACAAAGAATCCACTCAAAAAGCAATAGATGGAGTCACCAATAAGGTCAACTCGATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAATAACTTAGAAAGGAGAATAGAAAATTTAAACAAGAAGATGGAGGACGGATTCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAATGAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAAGGTCCGACTACAGCTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTTTCGAGTTCTATCACAGATGTGATAATGAATGTATGGAAAGTGTAAGAAACGGAACGTATGACTACCCGCAGTATTCGGAAGAAGCAAGACTAAACAGAGAGGAAATAAGTGGAGTAAAATTGGAATCAATAGGAACTTACCAAATACTGTCAATTTATTCAACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTGGCTGGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT + ATGGAGAAAATAGTGCTTCTTTTTGCAATAGTCAGTCTTGTTAAAAGTGATCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACACAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAAAAGACACACAACGGGAAGCTCTGCGATCTAGATGGAGTGAAGCCTCTAATTTTGAGAGATTGTAGTGTAGCTGGATGGCTCCTTGGAAATCCAATGTGTGACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAATCCAGTCAATGACCTCTGTTACCCAGGGGATTTCAATGACTATGAAGAATTGAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCCCCAAAAGTTCTTGGCCCAGTCATGAAGCCTCATTAGGGGTGAGCTCAGCATGTCCATACCAGGGAAGGTCCTCCTTTTTCAGAAATGTGGTATGGCTTATCAAAAAGAACAGTACATATCCAACAATAAAGAGGAGCTACAATAATACCAACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCGGCAGAGCAGACAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGGGACATCAACACTAAACCAGAGATTGATACCAAGAATAGCTACTAGATCCAAAGTAAACGGGCAAAGTGGAAGGATGGAGTTCTTCTGGACAATTTTAAAACCGAATGATGCAATCAATTTCGAGAGTAATGGAAATTTCATTGCCCCAGAATACGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTGAATTGGAATATGGTAACTGCAACACCAAGTGTCAAACACCAATGGGGGCGATAAATTCTAGTATGCCATTCCACAATATACACCCTCTCACCATCGGGGAATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGGCTCAGAAATAGCCCTCAAAGAGAGAGAAGA---AAAAAGAGAGGATTATTTGGAGCTATAGCAGGTTTTATAGAGGGGGGATGGCAGGGAATGGTAGATGGTTGGTATGGGTACCACCATAGCAATGAACAGGGGAGTGGGTACGCTGCAGACAAAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCGATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAACAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGGTTCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAATGAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAAGGTCCGACTACAGCTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTTTCGAGTTCTATCATAAATGTGATAATGAATGTATGGAAAGTGTAAGAAATGGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAAACTAAAAAGAGAGGAAATAAGTGGAGTAAAATTGGAATCAATAGGAATTTACCAAATACTGTCAATTTATTCCACAGTAGCGAGTTCCCTAGCACTGGCAATCATGGTAGCTGGTCTATCCTTATGGATGTGCTCCAATGGGTCGTTACAATGCAGA--- + ------------------------------------------------GACCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGATACAATAATGGAAAAGAATGTTACTGTTACACATGCCCAAGACATACTGGAAAGGACACACGACGGGAAGCTCTGCGATCTAAATGGAGTGAAACCTCTCATTTTGAGGGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCTATGTGTGACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAGTCCAGCCAATGACCTCTGTTATCCAGGGAATTTCAACGACTATGAAGAACTGAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCCCCAAAAGTTCTTGGTCCAATCATGATGCCTCATCAGGGGTGAGCTCAGCATGTCCATACCTTGGGAGGTCCTCCTTTTTCAGAAATGTGGTATGGCTTATCAAAAAGAACAGTGCATACCCAACAATAAAGAGGAGCTACAATAATACCAACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCGGCAGAGCAGACAAAGCTCTATCAAAATCCAACCACCTACATTTCCGTTGGAACATCAACACTGAATCAGAGATTGGTTCCAGAAATAGCTACTAGACCCAAAGTAAACGGGCAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAGCCGAATGATGCCATCAATTTCGAGAGTAATGGAAATTTCATTGCCCCAGAATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTGAATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCGATAAACTCTAGTATGCCATTCCACAACATACACCCCCTCACCATCGGGGAATGCCCCAAATATGTGAAATCAAACAGATTAGTTCTTGCGACTGGACTCAGAAATACCCCTCATAGGGAGAGAAGAAGAAAAAAGAGAGGACTATTTGGAGCTATAGCAGGTTTTATAGAAGGAGGATGGCAGGGAATGGTAGATGGTTGGTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACCAAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCGATCATTAACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAATAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAAATGGAAGACGGATTCCTAGATGTCTGGACTTACAATGCTGAACTTCTGGTTCTCATGGAAAATGAGAGAACTCTCGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAAGGTCCGACTACAGCTTAGGGATAATGCAAAGGAACTGGGTAATGGTTGTTTCGAATTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAAAAACGGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAACAGAGAGGAAATAAGTGGAGTAAAATTGGAATCAATGGGAACTTACCAAATACTGTCAATTTATTCAACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCTGGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT + ATGGAGAAAATAGTGCTTCTTCTTGCAATAATCAGCCTTGTTAAAAGTGATCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACACAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAAAAGACACACAATGGGAAGCTCTGCGACTTAGATGGGGTGAAGCCTCTAATTTTGAGAGACTGTAGTGTAGCTGGATGGCTCCTCGGGAACCCAATGTGTGACGAATTCATCAATGTACCGGAATGGTCTTACATAGTGGAGAAGGCCAGTCCAGCCAATGACCTCTGTTACCCAGGTGATTTCAACGATTATGAAGAACTGAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCCCCAAAAGTTCTTGGTCCAATCATGAAGCCTCATCAGGGGTGAGCTCAGCATGTCCATACCTGGGAAAGCCCTCCTTTTTCAGAAATGTGGTATGGCTTATCAAAAAGAACAGTGCATACCCAACAATAAAGAGGAGCTACAATAATACCAACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCGGCAGAGCAGACAAAGCTCTATCAAAACCCAATCACCTATATTTCCGTTGGAACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCTACCAGATCCAAAGTAAACGGGCAAAGTGGAAGGATGGAGTTCTTCTGGACAATTTTAAAACCGAATGATTCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGAATATGCATACAAAATTGTCAAGAAAGGGGACTCAGCAATTATGAAAAGCGAATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCGATAAACTCTAGTATGCCATTCCACAACATACACCCTCTCACCATCGGGGAATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGGCTCAGAAATAGCCCTCAAAGAGAGAGAAGAAGAAAGAAGAGAGGACTATTTGGAGCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTGGTATGGATACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACAAAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCGATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAATAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGATTCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAATGAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAAGGTCCGACTACAGCTTAGGGATAATGCAAAAGAGCTAGGTAACGGTTGTTTCGAGTTCTATCACAAATGTGATAATGAATGCATGGAAAGTGTAAGAAACGGAACGTATGACTACCCGCAATATTCAGAAGAAGCAAGGCTAAAAAGAGAGGAAATTAGTGGAGTAAAATTGGAATCAATAGGAACTTACCAAATACTGTCAATTTATTCAACAGTGGCAAGTTCCCTAGCGCTGGCAATCATGGTAGCTGGTCTATCTTTATGGATGTGCTCCAATGGTTCGTTACAATGCAGAATT + ATGGAGAAAATAGTGCTTCTTCTTGCAATAGTCAGTCTTGTTAAAAGTGATCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACACTATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAAAAGACACACAACGGGAAGCTCTGCGATCTAGATGGAGTGAAGCCTCTAATTTTGAGAGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCAATGTGTGACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAGTCCAGCCAATGACCTCTGTTACCCAGGGGATTTCAACGACTATGAAGAACTGAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCGGATCATCCCCAAAAGTTCTTGGTCCAATCATGATGCCTCATCAGGGGTGAGCTCAGCATGTCCATACCAGGGGAAGCCCTCCTTTTTCAGAAATGTGGTATGGCTTATCAAAAAGAACAGTACATACCCAACGATAAAGAGGAGCTACAATAATACCAACCCAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCGGCAGAGCAGATAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGGAACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCTACTAGATCCAAAGTAAATGGGCAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAGCCGAATGACGCTATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGAATATGCATACAAAATTGTCAAGAAAGGGGACTCAGCAATTATGAAAAGTGAATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCGATAAATTCTAGTATGCCATTCCACAACATACACCCTCTCACCATCGGGGAATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACAGGGCTCAGAAATAGCCCTCAAAGAGAGGGAAGAAGAAAAAAGAGAGGACTATTTGGAGCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTGGTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACAAAGAATCCACTCAAAAAGCAATAGATGGAGTCACCAATAAGGTCAACTCGATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAATAACTTAGAAAGGAGAATAGAAAATTTAAACAAGAAGATGGAGGACGGATTCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAATGAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGAAAAGGTCCGACTACAACTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTTTCGAGTTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAAAAACGGAACGTATGACTACCCGCAGTATACGGAAGAAGCAAGACTAAACAGAGAGGAAATAAGTGGAGTAAAATTGGAATCAATAGGAACTTACCAAATACTGTCAATTTATTCAACAGTAGTGAGTTCCCTAGCACTGGCAATCATGGTAGCTGGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT + ATGGAGAAAATAGTGCTTCTTCTTGCAATAGTCAGTCTTGTTAAAAGTGATCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACACAATAATGGAAAAGAATGTTACTGTTACACATGCCCAAGACATACTGGAAAAGACACACAATGGGAAGCTCTGTGACCTAGATGGGGTGAAGCCTCTAATTTTGAGAGATTGTAGTGTCGCTGGATGGCTCCTCGGGAACCCAATGTGTGACGAATTCATCAATGTACCGGAATGGTCTTACATAGTGGAGAAGGCCAGTCCAGCCAATGACCTCTGTTACCCAGGTGATTTCAACGATTATGAAGAACTGAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCCCCAAAAGTTCTTGGTCCAATCATGAAGCCTCATCAGGGGTGAGCTCAGCATGTCCATACCTGGGAAAGCCCTCCTTTTTCAGAAATGTGGTATGGCTTATCAAAAAGAACAGTGCATACCCAACAATAAAGAGGAGCTACAATAATACCAACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCGGCAGAGCAGACAAAGCTCTATCAAAACCCAACCACCTATGTTTCCGTTGGAACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCCACCAGATCCAAAGTAAACGGGCAAAGTGGAAGGATGGAGTTCTTCTGGACAATTTTAAAACCGAATGATGCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGAATATGCATACAAAATTGTCAAGAAAGGGGACTCAGCAATTATGAAAAGTGAATTGGAATATGGTAACTGCAATACCAAGTGTCAAACTCCAATGGGGGCGATAAACTCTAGTATGCCATTCCACAACATACACCCTCTCACCATCGGGGAATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGGCTCAGAAATAGCCCTCAAAGAGAGAGAAGAAGAAAAAAGAGAGGACTATTTGGAGCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTGGTATGGATACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACAAAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCGATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAATAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGATTCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAATGAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAAGGTCCGACTACAGCTTAGGGATAATGCAAAAGAGCTGGGTAACGGTTGTTTCGAGTTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAGAAACGGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAAAAGAGAGGAAATAAGTGGAGTAAAATTGGAATCAATAGGAACTTACCAAATACTGTCAATTTATTCAACAGTGGCGAGTTCCCTAGCGCTGGCAATCATGGTAGCTGGTCTATCTTTATGGATGTGCTCC------------------------ + ATGGAGAAAATAGTGCTTCTTCTTGCAATAGTCAGTCTTGTTAAAAGTGATCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACACAATAATGGAAAAGAACGTTACTGTTACACATGCTCAAGACATATTGGAAAAGACACACAACGGGAAGCTCTGCGACCTAGATGGAGTGAAGCCTCTAATTTTGAAAGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCAATGTGTGACGAATTCATCAATGTGCCGGAGTGGTCTTACATAGTGGAGAAGGCCAGTCCAGCCAATGACCTCTGTTACCCAGGGGATTTCAACGACTATGAAGAACTGAAACACCTATTGAGCAGAATAAACCATTTTGAAAAAATTCAGATCATCCCCAAAAGTTCTTGGTCCGATCATGAAGCCTCATCAGGGGTGAGCTCAGCATGTCCATACCTGGGGAAGCCCTCCTTTTTCAGAAATGTGGTATGGCTTATCAAAAAGAACAGTACATACCCAACAATAAAGAGGGGCTACAATAATACCAACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCGGCAGAGCAGATAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGGAACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCTACTAGATCCAAAGTAAACGGACAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAACCGAATGATGCTATCAATTTCGAGAGTAATGGAAATTTCATTGCTCCAGAATATGCATACAAAATTGTCAAGAAAGGGGACTCTGCAATTATGAAGAGTGAATTGGAATATGGCAACTGCAACACCAAGTGTCAAACTCCAGTGGGGGCGATAAATTCTAGCATGCCATTCCACAACATACACCCTCTCACCATCGGGGAATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGACTCAGAAATGCCCCTCAAAGAGAGGGAAGAAGAAAAAAGAGAGGACTATTTGGAGCTATAGCAGGGTTTATAGAGGGAGGATGGCAGGGGATGGTAGATGGTTGGTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACAAAGAATCCACTCAAAAAGCAATAGATGGAGTCACCAATAAGGTCAACTCGATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAATAACTTAGAAAGGAGAATAGAAAATTTAAACAAGAAGATGGAGGACGGATTCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAATGAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGAAAAGGTCCGACTACAACTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTTTCGAGTTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAAAAACGGAACGTATGACTACCGGCTGGACTCAGAAGAAGCAAGACTAAACAGAGAGGAAATAAGTGGAGTAAAATTGGAATCAATAGGAACTTACCAAATACTGTCAATTTATTCAACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCTGGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT + ------------------------------------------------GATCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACACAATAATGGAAAAGAATGTTACTGTTACACATGCCCAAGACATACTGGAAAGGACACACAACGGGAAGCTCTGCGATCTAAATGGAGTGAAACCTCTCATTTTGAGGGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCTATGTGTGACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAGTCCAGCCAATGACCTCTGTTATCCAGGGAATTTCAACGACTATGAAGAACTGAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCCCCAAAAGTTCTTGGTCCAATCATGATGCCTCATCAGGGGTGAGCTCAGCATGTCCATACCTTGGGAGGTCCTCCTTTTTCAGAAATGTGGTATGGCTTATCAAAAAGAACAGTGCATACCCAACAATAAAGAGGAGCTACAATAATACCAACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCGGCAGAGCAGACAAAGCTCTATCAAAATCCAACCACCTACATTTCCGTTGGAACATCAACACTGAACCAGAGATTGGTTCCAGAAATAGCTACTAGACCCAAAGTAAACGGGCAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAGCCGAATGATGCCATCAATTTCGAGAGTAATGGAAATTTCATTGCCCCAGAATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTGAATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCGATAAACTCTAGTATGCCATTCCACAACATACACCCCCTCACCATCGGGGAATGCCCCAAATATGTGAAATCAAACAGATTAGTTCTTGCGACTGGACTCAGAAATACCCCTCAAAGGGAGAGAAGAAGAAAAAAGAGAGGACTATTTGGAGCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTGGTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACCAAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCGATCATTAACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAATAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAAATGGAAGACGGATTCCTAGATGTCTGGACTTACAATGCTGAACTTCTGGTTCTCATGGAAAATGAGAGAACTCTCGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAAGGTCCGACTACAGCTTAGGGATAATGCAAAGGAACTGGGTAATGGTTGTTTCGAATTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAGAAACGGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAACAGAGAGGAAATAAGTGGAGTAAAATTGGAATCAATGGGAACTTACCAAATACTGTCAATTTATTCAACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCTGGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT; +END; +BEGIN TREES; + TREE part_1 = ((((((((TREESPARROW_HENAN_1_2004:0.0168632,TREESPARROW_HENAN_2_2004:0):0.00750257,CHICKEN_HEBEI_326_2005:0.0365197):0.00550724,((DUCK_GUANGZHOU_20_2005:0.0093118,(GOOSE_SHANTOU_2216_2005:0.00742248,PEREGRINEFALCON_HK_D0028_2004:0.00557022):0):0.00746946,CK_HK_WF157_2003:0.00752337):0.00747832):0.00374343,((TREESPARROW_HENAN_4_2004:0.00522777,((CHICKEN_HONGKONG_915_97:0,(HONGKONG_97_98:0.0060893,HONGKONG_538_97:0):0):0,(GOOSE_HONGKONG_W355_97:0,DUCK_HONGKONG_Y283_97:0):0.00185221):0.0271883):0.00169275,SWINE_ANHUI_2004:0.0160599):0.00628993):0,TREESPARROW_HENAN_3_2004:0.007557):0.0168326,((DUCK_VIETNAM_376_2005:0.00753771,CHICKEN_THAILAND_KANCHANABURI_CK_160_2005:0.00940355):0.00179475,VIETNAM_3062_2004:0):0.00185181):0,DUCK_VIETNAM_272_2005:0.00930519):0,HUMAN_VIETNAM_CL105_2005:0.00933176,MALLARD_VIETNAM_16_2003:0.00370987); + TREE part_2 = (((((((TREESPARROW_HENAN_1_2004:0.00185578,TREESPARROW_HENAN_3_2004:0.00369517):0.00370687,TREESPARROW_HENAN_4_2004:0):0.00561562,((CHICKEN_HEBEI_326_2005:0.017067,(SWINE_ANHUI_2004:0.00372414,TREESPARROW_HENAN_2_2004:0.00182066):0.011243):0.0114326,(((CHICKEN_HONGKONG_915_97:0,(GOOSE_HONGKONG_W355_97:0,DUCK_HONGKONG_Y283_97:0):0.00184479):0.0018473,HONGKONG_97_98:0.00556112):0,HONGKONG_538_97:0):0.0227642):0.00556345):0.00553646,(((DUCK_GUANGZHOU_20_2005:0.0074364,GOOSE_SHANTOU_2216_2005:0.00559107):0.00182622,PEREGRINEFALCON_HK_D0028_2004:0.00556514):0.00185365,CK_HK_WF157_2003:0.00741717):0):0.00927913,DUCK_VIETNAM_272_2005:0.0131166):0,VIETNAM_3062_2004:0.001844):0,(HUMAN_VIETNAM_CL105_2005:0.00932392,DUCK_VIETNAM_376_2005:0.011203):0.00371409,(MALLARD_VIETNAM_16_2003:0.00556606,CHICKEN_THAILAND_KANCHANABURI_CK_160_2005:0.00370617):0.0018452); + TREE part_3 = (((TREESPARROW_HENAN_1_2004:2.11182e-15,TREESPARROW_HENAN_2_2004:0.00658572):0.00163465,(CHICKEN_HEBEI_326_2005:0.00492123,(SWINE_ANHUI_2004:0.00656176,(((CHICKEN_HONGKONG_915_97:0.00163555,(HONGKONG_97_98:0.00163546,HONGKONG_538_97:0):0.00163576):0,GOOSE_HONGKONG_W355_97:0):0.0132195,((DUCK_HONGKONG_Y283_97:0.0304475,(((HUMAN_VIETNAM_CL105_2005:0.0016552,DUCK_VIETNAM_376_2005:0.00494069):0.00163812,(VIETNAM_3062_2004:0.00166859,MALLARD_VIETNAM_16_2003:0):0):0,(CHICKEN_THAILAND_KANCHANABURI_CK_160_2005:0.0032821,DUCK_VIETNAM_272_2005:0.00660576):0.00161845):0.0064711):0.00650152,(((DUCK_GUANGZHOU_20_2005:0.0032613,GOOSE_SHANTOU_2216_2005:0.00495087):0.00493945,PEREGRINEFALCON_HK_D0028_2004:0):0.00161808,CK_HK_WF157_2003:0.00498611):0.00488423):0.00193926):0.00325645):0.00330664):0.00163232):0.00163894,TREESPARROW_HENAN_3_2004:0.0065698,TREESPARROW_HENAN_4_2004:0); + +END; + +BEGIN ASSUMPTIONS; + CHARSET span_1 = 1-543; + CHARSET span_2 = 544-1086; + CHARSET span_3 = 1087-1698; + +END;
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/relax-in1.fa Mon Feb 18 15:14:26 2019 -0500 @@ -0,0 +1,20 @@ +>Human +AAAGAGATTACGAATGCCTTGGAAACCTGGGGTGCCTTGGGTCAGGACATCAACTTGGACATTCCTAGTTTTCAAATGAGTGATGATATTGACGATATAAAATGGGAAAAAACTTCAGACAAGAAAAAGATTGCACAATTCAGAAAAGAGAAAGAGACTTTCAAGGAAAAAGATACATATAAGCTATTTAAAAATGGAACTCTGAAAATTAAGCAT---CTGAAGACCGATGATCAGGATATCTACAAGGTATCAATATATGATACAAAAGGAAAAAATGTGTTGGAAAAAATATTTGATTTGAAGATTCAAGAGAGGGTCTCAAAACCAAAGATCTCCTGGACTTGTATCAACACAACCCTGACCTGTGAGGTAATGAATGGAACTGACCCCGAATTAAACCTGTATCAAGATGGGAAACATCTAAAA---CTTTCTCAGAGGGTCATCACACACAAGTGGACCACCAGCCTGAGTGCAAAATTCAAGTGCACAGCAGGGAACAAAGTCAGCAAGGAATCCAGTGTCGAGCCTGTCAGCTGTCCAGAGAAAGGTCTGGAC +>Chimp +GAAGAGATTACGAATGCCTTGGAAACCTGGGGTGCCTTGGGTCAGGACATCAACTTGGACATTCCTAGTTTTCAAATGAGTGATGATATTGACGATATAAAATGGGAAAAAACTTCAGACAAGAAAAAGATTGCACAATTCAGAAAAGAGAAAGAGACTTTCAAGGAAAAAGATACATATAAGCTATTTAAAAATGGAACTCTGAAAATTAAGCAT---CTGAAGACCGATGATCAGGATATCTACAAGGTATCAATATATGATACAAAAGGAAAAAATGTGTTGGAAAAAATATTTGATTTGAAGATTCAAGAGAGGGTCTCAAAACCAAAGATCTCCTGGACTTGTATCAACACAACCCTGACCTGTGAGGTAATGAATGGAACTGACCCCGAATTAAACCTGTATCAAGATGGGAAACATCTAAAA---CTTTCTCAGAGGGTCATCACACACAAGTGGACCACCAGCCTGAGTGCAAAATTCAAGTGCACAGCAGGGAACAAAGTCAGCAAGGAATCCAGTGTCGAGCCTGTCAGCTGTCCAGAGAAAGGTCTGGAC +>Baboon +AAAGAGATTAGGAATGCTTTGGAAACCTGGGGAGCGCTGGGTCAGGACATCGACTTGGACATTCCTAGTTTTCAAATGAGTGATGATATTGATGATATAAAATGGGAGAAAACTTCAGACAAGAAAAAGATTGCACAATTCAGAAAAGAGAAGGAGACTTTCGAGGAAAAAGATGCATATAAGCTATTTAAAAACGGAACTCTGAAAATTAAGCAT---CTGAAGATCCATGATCAGGATAGCTACAAGGTATCAATATACGATACAAAAGGAAAAAATGTGTTGGAAAAAACATTTGATTTGAAGATTCAAGAGAGGGTCTCAGAACCAAAGATCTCCTGGACTTGTATCAACACAACCCTGACCTGTGAAGTAATGAATGGAACTGACCCCGAATTAAACCTGTATCAAGATGGGAAACATCTAAAA---CTTTCTCAGAGGGTCATCACACACAAGTGGACCACCAGCCTGAGTGCGAAATTCAAGTGCACAGCAGGGAACAAAGTCAGCAAGGAATCCAGGATGGAGACTGTCAGCTGTCCAGAGAAAGGTCTGGAC +>RhMonkey +AAAGAGATTAGGAATGCTTTGGAAACCTGGGGAGCGCTGGGTCAGGACATCGACTTGGACATTCCTAGTTTTCAAATGAGTGATGATATTGATGATATAAGATGGGAAAAAACTTCAGACAAGAAAAAGATTGCACAATTCAGAAAAGAGAAGGAGACTTTCGAGGAAAAAGATGCATATAAGCTATTTAAAAACGGAACTCTGAAAAYTAAGCAT---CTGAAGATCCATGATCAGGATAGCTACAAGGTATCAATATACGATACAAAAGGAAAAAATGTGTTGGAAAAAACATTTGATTTGAAGATTCAAGAGAGGGTCTCAGAACCAAAGATCTCCTGGACTTGTATCAACACAACCCTGACCTGTGAAGTAATGAATGGAACTGRCCCCGAATTAAACCTGTATCAAGATGGGAAACATGTAAAA---CTTTCTCAGAGGGTCATCACACACAAGTGGACCACCAGCCTGAGTGCGAAATTCAAGTGCACAGCAGGGAACAAAGTCAGCAAGGAATCCAGGATGGAGACTGTCAGCTGTCCAGAGAAAGGTCTGGAC +>Cow +------------GAAAGCATTGTCGTCTGGGGTGCCCTGGATCATGACCTCAACCTGGACATTCCTGGTTTTCCAAGAAGTGATATAGTGGCAGATATAAAATGGAACAGA------AACAAAAACAAGATTGCACGAATAAAGAAAGATATGCCACTTCACAATGAAATGGACAAATATGATATGTTTACAAATGGAACTCTGAAAATTAAAACT---CTGATGAGAAACGATAGTGGTCTCTATGAGGTAGAGGTTTATGATTCAAATGGAGTAAACCTACTGAGCAAAAAATTTGATTTGAAGATTCAAGAGATGCTCTCAGGACCTGAAATTAACTGGATCTGTACCAACAGAACTGTGAGCTGCAAGGTAGAAAATGGAAGTAATCCTAAATTACAACTGTTTTTAAATACGACCCGTGTCAAACAAGATCATGGGAAGCTCATCACCTACACGTGGAACACCAGATGGAATAAAACATTCAAGTGCGTGGCGAGTAACCATGTCGATAGCAAAGTCAGCATAGAGATCGCCGTGTGTCCAGATGAAGGTCTGGAT +>Pig +---------------ACTGAGGTTGTCTGGGGCATCGTGGATCAAGACATCAACCTGGACATTCCTGAACTTTCAAAACATGATAACGTAGATCATATACGATGGCAGAAG------AATGAAAACAAGATCGCAGAATTTAAAAAAAACAAAGAAACTCACCCTGTGAAAGACACATACATGATGTTACCAAATGGAACTCTGAGAATTAAAGAT---CTGAAGAGAGATGATGAGGGTATCTACAAGGTAACTGTCTATGCTACGGATGGAAAACACATGCTGGAGAGAAAATTTGATTTGCCGATTCTAGATGGGGTCTCAAAACCTGTAATCTCCTGGAGCTGTGCCGACAAAACGGTGACCTGTGAGGTAGCAGAAGGAAGTGACCCTAAGTTAAAACTGTATGTAAATAAGTCCACTGCCAGAGAAGGTCGTCAGAAGGTCATCCTGTGGAAGTGGAACACCAAATGGAGCACATTATTCAAGTGTGTGGCCAGTAACAACGCCAGTGAGCAAATCAGCATGGTGACCATCAGTTGTACGGGGCAAGGTCTGGAT +>Horse +------------AAGAATATCACCATCTTGGGTGCCCTGGAACGTGATATCAACCTGGACATTCCTGCTTTTCAAATGAGTGAGCATGTAGAAGATATACAATGGAGCAAA------GGAAAAACCAAGATTGCAAAATTCAAAAATGGCAGTATGACTTTCCAGAAAGATAAAACATACGAGGTATTAAAAAATGGAACTCTGAAAATTAAACAT---CTGGAGAGAATTCATGAAGGTACCTACAAGGTAGACGCATATGATAGTGATGGAAAAAATGTGTTGGAGGAAACATTTCATTTGAGCCTTCTAGAGATGGTCTCAAAACCTAATATCTCCTGGAGCTGCACCAACACCACCCTGACCTGCGAGGTGACAAAAGGAACTGACTTTGAGTTAAAACTCTATCTAAATGGGAGAATGATCCAAAAAAGTCCTCGCAAAGTCATCGTATACAAGCGGGCCAGCAACCAAATTGCGTCCTTCAAGTGCACAGCCAATAACACAGTCAGCGAGGAAAGCAGCTCTGTGGTCATCAGGTGTACAGAGAAAGGTCTGGAT +>Cat +---------GCAAATGATGATATCGTCTGGGGTACCCTGGGTCAGGACATCAACCTGGACATTCCTGATTCTCAA---GGGATTAATATAGATGATATACACTGGGAAAAA------GGCAAGAAGAAGGTGGCGAGGTTCCAAATTAGCAACAAGCCTAAGAATCCAGATGAAAAATATAATGTGTCAATGAATGGAACTCTGAAAATTAAACAT---CTGATGCTAGAAGACTGCGATACCTACAAGGTTGTTATATACGATAAGGATGGAAAGAATGTGTTGGATAAAACATTTCAGCTGAAGATTCAAGAGAAGGTCTCAACGCCTAACATCGACTGGAATTGTATCAACAAAACCCTGGTCTGTAAGGTATCAAATGGAACAGACCCTGAATTAAAACTGTACGTAAATGGGACCAGTATCAAGCCCGTTTCTTCGAAGTTCAGCACATACAGGTTTATAAACAAGCAGAAGATATTAGTCAACTGCACGGCAGAAAACAAAGTCAGCAAGGAAAGCGACGTGAAGATGATCACTTGTTCAGAGAAGGGTCTGGAC +>Mouse +---------AGAGACAATGAGACCATCTGGGGTGTCTTGGGTCATGGCATCACCCTGAACATCCCCAACTTTCAAATGACTGATGATATTGATGAGGTGCGATGGGTAAGG------AGGGGCACCCTGGTCGCAGAGTTTAAAAGGAAGAAGCCACCTTTTTTGATATCAGAAACGTATGAGGTCTTAGCAAACGGATCCCTGAAGATAAAGAAGCCGATGATGAGAAACGACAGTGGCACCTATAATGTAATGGTGTATGGCACAAATGGGATGACTAGGCTGGAGAAGGACCTGGACGTGAGGATTCTGGAGAGGGTCTCAAAGCCCATGATCCACTGGGAATGCCCCAACACAACCCTGACCTGTGCGGTCTTGCAAGGGACAGATTTTGAACTGAAGCTGTATCAAGGGGAAACACTACTCAATAGTCTCCCCCAGAAGAACATGAGTTACCAGTGG---ACCAACCTGAACGCACCATTCAAGTGTGAGGCGATAAACCCGGTCAGCAAGGAGTCTAAGATGGAAGTTGTTAACTGTCCAGAGAAAGGTCTGTCC +>Rat +---------AGAGACAGTGGGACCGTCTGGGGTGCCCTGGGTCATGGCATCAACCTGAACATCCCTAACTTTCAAATGACTGATGATATTGATGAGGTGCGATGGGAGAGG------GGGAGCACCCTGGTTGCCGAGTTTAAAAGGAAGATGAAGCCTTTTTTGAAATCGGGAGCATTTGAGATCTTAGCAAATGGAGACTTGAAGATAAAGAAT---CTGACAAGAGATGACAGTGGCACCTATAATGTAACGGTATACAGCACAAATGGGACACGTATCCTGGACAAGGCACTGGACTTGAGGATTCTAGAGATGGTCTCAAAGCCGATGATCTACTGGGAGTGCAGCAACGCAACCCTGACCTGTGAGGTCTTGGAAGGAACAGATGTTGAACTAAAGCTGTACCAAGGAAAGGAGCATCTCAGGAGCCTCCGTCAGAAGACCATGAGTTACCAGTGG---ACCAACCTGAGAGCACCGTTTAAGTGCAAGGCGGTAAACAGGGTCAGCCAGGAGTCTGAGATGGAAGTTGTCAACTGTCCAGAGAAAGGTCTGCCC
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/relax-in1.nhx Mon Feb 18 15:14:26 2019 -0500 @@ -0,0 +1,1 @@ +((((Pig:0.147969,Cow{TEST}:0.21343):0.085099,Horse{TEST}:0.165787,Cat{TEST}:0.264806):0.058611,((RhMonkey:0.002015,Baboon:0.003108):0.022733,(Human:0.004349,Chimp:0.000799):0.011873):0.101856):0.340802,Rat:0.050958,Mouse:0.09795) \ No newline at end of file
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/relax-in2.nhx Mon Feb 18 15:14:26 2019 -0500 @@ -0,0 +1,1 @@ +((((Pig{TEST}:0.147969,Cow{TEST}:0.21343){TEST}:0.085099,Horse:0.165787,Cat:0.264806){TEST}:0.058611,((RhMonkey{REFERENCE}:0.002015,Baboon{REFERENCE}:0.003108){REFERENCE}:0.022733,(Human{REFERENCE}:0.004349,Chimp{REFERENCE}:0.000799):0.011873){REFERENCE}:0.101856){REFERENCE}:0.340802,Rat{REFERENCE}:0.050958,Mouse{REFERENCE}:0.09795)
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/relax-out1.json Mon Feb 18 15:14:26 2019 -0500 @@ -0,0 +1,499 @@ +{ + "analysis":{ + "info":"RELAX (a random effects test of selection relaxation) uses a random effects branch-site model framework to test whether a set of 'Test' branches evolves under relaxed selection relative to a set of 'Reference' branches (R), as measured by the relaxation parameter (K).\n Version 2.1 adds a check for stability in K estimates to try to mitigate convergence problems", + "version":"2.1", + "citation":"RELAX: Detecting Relaxed Selection in a Phylogenetic Framework (2015). Mol Biol Evol 32 (3): 820-832", + "authors":"Sergei L Kosakovsky Pond, Ben Murrell, Steven Weaver and Temple iGEM / UCSD viral evolution group", + "contact":"spond@temple.edu", + "requirements":"in-frame codon alignment and a phylogenetic tree, with at least two groups of branches defined using the {} notation (one group can be defined as all unlabeled branches)" + }, + "input":{ + "file name":"/home/galaxystaging/galaxy/database/jobs_directory/000/79/working/relax_input.fa", + "number of sequences":10, + "number of sites":187, + "partition count":1, + "trees":{ + "0":"((((Pig:0.147969,Cow:0.21343)Node3:0.085099,Horse:0.165787,Cat:0.264806)Node2:0.058611,((RhMonkey:0.002015,Baboon:0.003108)Node9:0.022733,(Human:0.004349,Chimp:0.000799)Node12:0.011873)Node8:0.101856)Node1:0.340802,Rat:0.050958,Mouse:0.09795)" + } + }, + "fits":{ + "Nucleotide GTR":{ + "Log Likelihood":-3531.964032193222, + "estimated parameters":24, + "AIC-c":7112.142925621896, + "Equilibrium frequencies":[ + [0.3563279857397504], + [0.1837789661319073], + [0.2402852049910873], + [0.2196078431372549] + ], + "Rate Distributions":{ + "Substitution rate from nucleotide A to nucleotide C":0.5465757107930838, + "Substitution rate from nucleotide A to nucleotide G":1, + "Substitution rate from nucleotide A to nucleotide T":0.264131123736109, + "Substitution rate from nucleotide C to nucleotide G":0.4861812992450388, + "Substitution rate from nucleotide C to nucleotide T":1.017887589835735, + "Substitution rate from nucleotide G to nucleotide T":0.3021773696987065 + }, + "display order":0 + }, + "MG94xREV with separate rates for branch sets":{ + "Log Likelihood":-3460.931903299487, + "estimated parameters":32, + "AIC-c":6987.013507197776, + "Equilibrium frequencies":[ + [0.04785168648208005], + [0.03911346079312019], + [0.04842054060317301], + [0.04069665666515385], + [0.01817010744778396], + [0.01485205303123071], + [0.01838611113045968], + [0.01545321970309948], + [0.0190138898893362], + 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Likelihood":-3429.125323833579, + "estimated parameters":36, + "AIC-c":6931.704002822642, + "Rate Distributions":{ + "Test":{ + "0":{ + "omega":0, + "proportion":0.1993913071931658 + }, + "1":{ + "omega":0, + "proportion":0.3360341729181165 + }, + "2":{ + "omega":2.153056268947235, + "proportion":0.4645745198887177 + } + }, + "Reference":{ + "0":{ + "omega":0, + "proportion":0.1993913071931658 + }, + "1":{ + "omega":0, + "proportion":0.3360341729181165 + }, + "2":{ + "omega":6.166712663934246, + "proportion":0.4645745198887177 + } + } + }, + "display order":2 + }, + "RELAX null":{ + "Log Likelihood":-3437.187429488768, + "estimated parameters":35, + "AIC-c":6945.748904779063, + "Rate Distributions":{ + "Test":{ + "0":{ + "omega":0.1177689533662908, + "proportion":0.4926494715348529 + }, + "1":{ + "omega":0.3195682613972807, + "proportion":0.1517366025099117 + }, + "2":{ + "omega":3.893733071412322, + "proportion":0.3556139259552353 + } + }, + "Reference":{ + "0":{ + 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}, + "RELAX alternative":{ + "attribute type":"branch length", + "display order":2 + }, + "RELAX null":{ + "attribute type":"branch length", + "display order":3 + }, + "RELAX partitioned descriptive":{ + "attribute type":"branch length", + "display order":5 + } + } + } +} \ No newline at end of file