Mercurial > repos > proteore > proteore_topgo

changeset 15:da0bf437245d draft

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planemo upload commit 04f32f531b4e10ca87c42df2c8ce35a15f063531-dirty
author proteore
date Mon, 29 Oct 2018 06:10:39 -0400
parents 4ebc0fa10ebd
children e4f86955692b
files topGO.xml
diffstat 1 files changed, 11 insertions(+), 11 deletions(-) [+]
line wrap: on
line diff
--- a/topGO.xml	Fri Oct 26 08:26:00 2018 -0400
+++ b/topGO.xml	Mon Oct 29 06:10:39 2018 -0400
@@ -1,14 +1,14 @@
-<tool id="topGO" name="Enrichment analysis for Gene Ontology" version="2018.10.26">
+<tool id="topGO" name="Enrichment analysis for Gene Ontology" version="2018.10.29">
     <description>(Human, Mouse, Rat) (topGO)</description>
     <requirements>
         <requirement type="package" version="3.4.1">R</requirement>
         <requirement type="package" version="3.0.0">r-ggplot2</requirement>
-        <requirement type="package" version="3.5.0">bioconductor-org.hs.eg.db</requirement>
-        <requirement type="package" version="3.5.0">bioconductor-org.mm.eg.db</requirement>
-        <requirement type="package" version="3.5.0">bioconductor-org.rn.eg.db</requirement>
-        <requirement type="package" version="3.5.0">bioconductor-org.ce.eg.db</requirement>
-        <requirement type="package" version="3.5.0">bioconductor-org.dm.eg.db</requirement>
-        <requirement type="package" version="3.5.0">bioconductor-org.sc.sgd.db</requirement>
+        <requirement type="package" version="3.6.0">bioconductor-org.hs.eg.db</requirement>
+        <requirement type="package" version="3.6.0">bioconductor-org.mm.eg.db</requirement>
+        <requirement type="package" version="3.6.0">bioconductor-org.rn.eg.db</requirement>
+        <!--requirement type="package" version="3.6.0">bioconductor-org.ce.eg.db</requirement-->
+        <!--requirement type="package" version="3.6.0">bioconductor-org.dm.eg.db</requirement-->
+        <!--requirement type="package" version="3.6.0">bioconductor-org.sc.sgd.db</requirement-->
         <!--requirement type="package" version="3.5.0">bioconductor-org.at.tair.db</requirement-->
         <requirement type="package" version="1.56.0">bioconductor-graph</requirement>
         <requirement type="package" version="1.40.0">bioconductor-annotationdbi</requirement>
@@ -105,12 +105,12 @@
   </conditional>
     <param name="geneuniverse" type="select" label="Select a specie">
       <!--option value="org.At.tair.db" >Arabidopsis</option-->
-      <option value="org.Ce.eg.db" >Worm (C. elegans)</option>
-      <option value="org.Dm.eg.db" >Fly (D. melanogaster)</option>
+      <!--option value="org.Ce.eg.db" >Worm (C. elegans)</option-->
+      <!--option value="org.Dm.eg.db" >Fly (D. melanogaster)</option-->
       <option value="org.Hs.eg.db" selected="true">Human (H. sapiens)</option>
       <option value="org.Mm.eg.db" >Mouse (M. musculus)</option>
-      <option value="org.Rn.eg.db" >Rat (Rattus norvegicus)</option>
-      <option value="org.Sc.sgd.db" >Yeast (S. cerevisiae)</option>
+      <option value="org.Rn.eg.db" >Rat (R. norvegicus)</option>
+      <!--option value="org.Sc.sgd.db" >Yeast (S. cerevisiae)</option-->
     </param>
     <param name="ontocat" type="select" label="Ontology category">
       <option value="BP" >Biological Process</option>