Mercurial > repos > proteore > proteore_topgo

diff topGO.xml @ 24:6d946862a105 draft default tip

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"planemo upload commit bcb889be3548adf81c6d163c27a0d9afc71b8e05-dirty"
author proteore
date Mon, 17 May 2021 12:44:00 +0000
parents 95b0250918f6
children
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--- a/topGO.xml	Thu Sep 26 08:48:57 2019 -0400
+++ b/topGO.xml	Mon May 17 12:44:00 2021 +0000
@@ -1,4 +1,4 @@
-<tool id="topGO" name="Enrichment analysis for Gene Ontology" version="2019.09.26">
+<tool id="topGO" name="Enrichment analysis" version="2021.04.12">
     <description>(Human, Mouse, Rat)[topGO]</description>
     <requirements>
         <requirement type="package">R</requirement>
@@ -6,10 +6,6 @@
         <requirement type="package" version="3.8.2">bioconductor-org.hs.eg.db</requirement>
         <requirement type="package" version="3.8.2">bioconductor-org.mm.eg.db</requirement>
         <requirement type="package" version="3.8.2">bioconductor-org.rn.eg.db</requirement>
-        <!--requirement type="package" version="3.6.0">bioconductor-org.ce.eg.db</requirement-->
-        <!--requirement type="package" version="3.6.0">bioconductor-org.dm.eg.db</requirement-->
-        <!--requirement type="package" version="3.6.0">bioconductor-org.sc.sgd.db</requirement-->
-        <!--requirement type="package" version="3.5.0">bioconductor-org.at.tair.db</requirement-->
         <requirement type="package" version="1.62.0">bioconductor-graph</requirement>
         <requirement type="package" version="1.46.0">bioconductor-annotationdbi</requirement>
         <requirement type="package" version="3.8.2">bioconductor-go.db</requirement>
@@ -174,8 +170,8 @@
        <param name="plot" value="dotplot,barplot"/>
        <param name="geneuniverse" value="org.Hs.eg.db"/>
        <output name="outputtext" file="result.tsv"/>
-       <output name="outputbarplot" file="barplot.png" compare="sim_size"/>
-       <output name="outputdotplot" file="dotplot.png" compare="sim_size"/>
+       <output name="outputbarplot" file="barplot.png" compare="sim_size"  delta_frac="0.2" />
+       <output name="outputdotplot" file="dotplot.png" compare="sim_size" delta_frac="0.2" />
      </test>
    </tests>
    <help><![CDATA[