Mercurial > repos > proteore > proteore_topgo

comparison topGO.xml @ 24:6d946862a105 draft default tip

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"planemo upload commit bcb889be3548adf81c6d163c27a0d9afc71b8e05-dirty"
author proteore
date Mon, 17 May 2021 12:44:00 +0000
parents 95b0250918f6
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23:95b0250918f6 24:6d946862a105
1 <tool id="topGO" name="Enrichment analysis for Gene Ontology" version="2019.09.26"> 1 <tool id="topGO" name="Enrichment analysis" version="2021.04.12">
2 <description>(Human, Mouse, Rat)[topGO]</description> 2 <description>(Human, Mouse, Rat)[topGO]</description>
3 <requirements> 3 <requirements>
4 <requirement type="package">R</requirement> 4 <requirement type="package">R</requirement>
5 <requirement type="package">r-ggplot2</requirement> 5 <requirement type="package">r-ggplot2</requirement>
6 <requirement type="package" version="3.8.2">bioconductor-org.hs.eg.db</requirement> 6 <requirement type="package" version="3.8.2">bioconductor-org.hs.eg.db</requirement>
7 <requirement type="package" version="3.8.2">bioconductor-org.mm.eg.db</requirement> 7 <requirement type="package" version="3.8.2">bioconductor-org.mm.eg.db</requirement>
8 <requirement type="package" version="3.8.2">bioconductor-org.rn.eg.db</requirement> 8 <requirement type="package" version="3.8.2">bioconductor-org.rn.eg.db</requirement>
9 <!--requirement type="package" version="3.6.0">bioconductor-org.ce.eg.db</requirement-->
10 <!--requirement type="package" version="3.6.0">bioconductor-org.dm.eg.db</requirement-->
11 <!--requirement type="package" version="3.6.0">bioconductor-org.sc.sgd.db</requirement-->
12 <!--requirement type="package" version="3.5.0">bioconductor-org.at.tair.db</requirement-->
13 <requirement type="package" version="1.62.0">bioconductor-graph</requirement> 9 <requirement type="package" version="1.62.0">bioconductor-graph</requirement>
14 <requirement type="package" version="1.46.0">bioconductor-annotationdbi</requirement> 10 <requirement type="package" version="1.46.0">bioconductor-annotationdbi</requirement>
15 <requirement type="package" version="3.8.2">bioconductor-go.db</requirement> 11 <requirement type="package" version="3.8.2">bioconductor-go.db</requirement>
16 <requirement type="package" version="2.36.0">bioconductor-topgo</requirement> 12 <requirement type="package" version="2.36.0">bioconductor-topgo</requirement>
17 </requirements> 13 </requirements>
172 <param name="correction" value="BH"/> 168 <param name="correction" value="BH"/>
173 <param name="textoutput" value="TRUE"/> 169 <param name="textoutput" value="TRUE"/>
174 <param name="plot" value="dotplot,barplot"/> 170 <param name="plot" value="dotplot,barplot"/>
175 <param name="geneuniverse" value="org.Hs.eg.db"/> 171 <param name="geneuniverse" value="org.Hs.eg.db"/>
176 <output name="outputtext" file="result.tsv"/> 172 <output name="outputtext" file="result.tsv"/>
177 <output name="outputbarplot" file="barplot.png" compare="sim_size"/> 173 <output name="outputbarplot" file="barplot.png" compare="sim_size" delta_frac="0.2" />
178 <output name="outputdotplot" file="dotplot.png" compare="sim_size"/> 174 <output name="outputdotplot" file="dotplot.png" compare="sim_size" delta_frac="0.2" />
179 </test> 175 </test>
180 </tests> 176 </tests>
181 <help><![CDATA[ 177 <help><![CDATA[
182 178
183 179