Mercurial > repos > proteore > proteore_prot_features_3orga

changeset 7:ca8d8d379588 draft

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planemo upload commit c9d70181a2b587e53dcc4b5885b74b625def6b8c-dirty
author proteore
date Mon, 16 Dec 2019 12:18:49 +0000
parents 21a88e16dfef
children e41b955b610a
files add_protein_features_3orga.xml
diffstat 1 files changed, 7 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/add_protein_features_3orga.xml	Mon Dec 16 10:20:05 2019 +0000
+++ b/add_protein_features_3orga.xml	Mon Dec 16 12:18:49 2019 +0000
@@ -1,4 +1,4 @@
-<tool id="prot_features_3orga" name="Add protein features (3 orga)" version="2019.12.16.2">
+<tool id="prot_features_3orga" name="Add protein features (3 orga)" version="2019.12.16.3">
 <description>[UniProt]
 </description>
 <requirements>
@@ -106,7 +106,7 @@
       <param name="header" value="true"/>
     </conditional>
 
-    <param name="pc_features" value='Entry name,Protein names,Length,Mass,Features,Intramembrane,Transmembrane,Topological domain,Pathway,Function [CC],Post-translational modification,Subcellular location [CC],Subunit structure [CC],Domain [CC],Tissue specificity,Involvement in disease'/> 
+    <param name="pc_features" value='Entry.name,Protein.names,Length,Mass,Features,Intramembrane,Transmembrane,Topological.domain,Pathway,Function.[CC],Post-translational.modification,Subcellular.location.[CC],Subunit.structure.[CC],Domain.[CC],Tissue.specificity,Involvement.in.disease'/> 
       
     <output name="output2" file="results_wilson-foie-souris-up.tsv"/>
   </test>
@@ -116,13 +116,15 @@
 
 **Description**
 
-This tool retrieves annotation (protein features) from the UniProt database (Mouse reference proteome) to enrich your protein IDs list.
+This tool retrieves annotation (protein features) from the UniProt database (Reference Proteome) to enrich your protein IDs list.
+This tool is dedicated to Human, Mouse and Rat. 
 
 -----
 
 **Input**
 
-A list of UniProt Accession Number (e.g. P05090) entered in a copy/paste mode or a file containing one or multiple columns with **at least one column of Uniprot accession number**. If your input file contains other type of IDs, please use the ID_Converter tool.  
+A list of UniProt Accession Number (e.g. P05090) entered in a copy/paste mode or a file containing one or multiple columns with **at least one column of Uniprot accession number**. 
+If your input file contains other type of IDs, please use the ID_Converter tool.  
 
 .. class:: warningmark
 	
@@ -148,7 +150,7 @@
 
 **Data source (release date)**
 
-Annotations have been retrieved from UniProt.org (release 02/2019).
+Annotations have been retrieved from UniProt.org (release 02/2019 for mouse, and 12/2019 for Human and Rat).
 
 -----