Mercurial > repos > proteore > proteore_prot_features
diff README.rst @ 0:b455ec3f4f33 draft
planemo upload commit 9760cde192a15cdf3d2dbec05dd867eaa0392bcd-dirty
| author | proteore |
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| date | Mon, 12 Nov 2018 11:10:16 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/README.rst Mon Nov 12 11:10:16 2018 -0500 @@ -0,0 +1,30 @@ +Wrapper for Protein Features tool +================================= + +**Authors** + +Lisa Peru, T.P. Lien Nguyen, Florence Combes, Yves Vandenbrouck CEA, INSERM, CNRS, Grenoble-Alpes University, BIG Institute, FR + +Sandra Dérozier, Olivier Rué, Christophe Caron, Valentin Loux INRA, Paris-Saclay University, MAIAGE Unit, Migale Bioinformatics platform + +This work has been partially funded through the French National Agency for Research (ANR) IFB project. + +Contact support@proteore.org for any questions or concerns about the Galaxy implementation of this tool. + +--------------------------------- + +This tool add annotation (protein features) from neXtProt database (knowledge base on human proteins) to your protein IDs list. + +**Input** + +Input can be a file containing multiple fields but with **at least one column of Uniprot accession number or neXtProt IDs**. If your input file contains other type of IDs, please use the ID_Converter tool. + +**Databases** + +Annotations have been retrieved from the neXtProt released on 21/02/2018 using the latest data from peptideAtlas (release Human 2018-1) + +using a REST API (https://academic.oup.com/nar/article/43/D1/D764/2439066#40348985) (Gaudet et al., 2017) + +**Outputs** + +The output is a tabular file. The initial columns are kept and columns are be added according to which annotation you have selected. \ No newline at end of file
