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| author | proteore |
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| date | Mon, 12 Nov 2018 11:10:16 -0500 |
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| 1 Wrapper for Protein Features tool | |
| 2 ================================= | |
| 3 | |
| 4 **Authors** | |
| 5 | |
| 6 Lisa Peru, T.P. Lien Nguyen, Florence Combes, Yves Vandenbrouck CEA, INSERM, CNRS, Grenoble-Alpes University, BIG Institute, FR | |
| 7 | |
| 8 Sandra Dérozier, Olivier Rué, Christophe Caron, Valentin Loux INRA, Paris-Saclay University, MAIAGE Unit, Migale Bioinformatics platform | |
| 9 | |
| 10 This work has been partially funded through the French National Agency for Research (ANR) IFB project. | |
| 11 | |
| 12 Contact support@proteore.org for any questions or concerns about the Galaxy implementation of this tool. | |
| 13 | |
| 14 --------------------------------- | |
| 15 | |
| 16 This tool add annotation (protein features) from neXtProt database (knowledge base on human proteins) to your protein IDs list. | |
| 17 | |
| 18 **Input** | |
| 19 | |
| 20 Input can be a file containing multiple fields but with **at least one column of Uniprot accession number or neXtProt IDs**. If your input file contains other type of IDs, please use the ID_Converter tool. | |
| 21 | |
| 22 **Databases** | |
| 23 | |
| 24 Annotations have been retrieved from the neXtProt released on 21/02/2018 using the latest data from peptideAtlas (release Human 2018-1) | |
| 25 | |
| 26 using a REST API (https://academic.oup.com/nar/article/43/D1/D764/2439066#40348985) (Gaudet et al., 2017) | |
| 27 | |
| 28 **Outputs** | |
| 29 | |
| 30 The output is a tabular file. The initial columns are kept and columns are be added according to which annotation you have selected. |