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annotate README.rst @ 6:a37b623bcd7c draft

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author proteore
date Mon, 11 Mar 2019 04:40:52 -0400
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1 Wrapper for Protein Features tool
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2 =================================
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4 **Authors**
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6 Lisa Peru, T.P. Lien Nguyen, Florence Combes, Yves Vandenbrouck CEA, INSERM, CNRS, Grenoble-Alpes University, BIG Institute, FR
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8 Sandra Dérozier, Olivier Rué, Christophe Caron, Valentin Loux INRA, Paris-Saclay University, MAIAGE Unit, Migale Bioinformatics platform
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10 This work has been partially funded through the French National Agency for Research (ANR) IFB project.
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12 Contact support@proteore.org for any questions or concerns about the Galaxy implementation of this tool.
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14 ---------------------------------
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16 This tool add annotation (protein features) from neXtProt database (knowledge base on human proteins) to your protein IDs list.
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18 **Input**
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20 Input can be a file containing multiple fields but with **at least one column of Uniprot accession number or neXtProt IDs**. If your input file contains other type of IDs, please use the ID_Converter tool.
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22 **Databases**
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24 Annotations have been retrieved from the neXtProt released on 21/02/2018 using the latest data from peptideAtlas (release Human 2018-1)
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26 using a REST API (https://academic.oup.com/nar/article/43/D1/D764/2439066#40348985) (Gaudet et al., 2017)
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28 **Outputs**
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30 The output is a tabular file. The initial columns are kept and columns are be added according to which annotation you have selected.