Mercurial > repos > proteore > proteore_pathview_mapping
diff README.rst @ 8:33c9bd75882a draft
planemo upload commit 1953798eb28b6e45c78342ed4c6a6a978d096fca
| author | proteore |
|---|---|
| date | Thu, 30 Aug 2018 06:12:51 -0400 |
| parents | 097bb3ed2b4d |
| children | 9fe4a861601b |
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--- a/README.rst Mon Aug 27 11:21:34 2018 -0400 +++ b/README.rst Thu Aug 30 06:12:51 2018 -0400 @@ -15,13 +15,17 @@ This tool map a list of Uniprot Accession number or Entrez gene ID to KEGG pathway with pathview R package. +Select your identifier type : UniprotAC or Entrez gene ID + Select an input file containing ids in a column, set header and column number or copy/paste your ids. -Select your identifier type and a species of interest (for now only human available). +You can import 1 to 3 column(s) of expression values if you are importing ids from a file. + +Select a species of interest. -Select one or several pathways of interest from the dropdown menu or copy/paste KEGG pathway id(s) +Select one or several pathways of interest from the dropdown menu or copy/paste KEGG pathway id(s) or import it from a file. -Select the graph format : KEGG or graphviz +Select the graph format : KEGG (jpg) or graphviz (pdf) Uniprot accession number converted to Entrez geneID or Entrez geneID are mapped to each selected pathways.
