Mercurial > repos > proteore > proteore_pathview_mapping

comparison README.rst @ 8:33c9bd75882a draft

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planemo upload commit 1953798eb28b6e45c78342ed4c6a6a978d096fca
author proteore
date Thu, 30 Aug 2018 06:12:51 -0400
parents 097bb3ed2b4d
children 9fe4a861601b
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7:b617d4bbebf8 8:33c9bd75882a
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16 This tool map a list of Uniprot Accession number or Entrez gene ID to KEGG pathway with pathview R package. 16 This tool map a list of Uniprot Accession number or Entrez gene ID to KEGG pathway with pathview R package.
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18 Select your identifier type : UniprotAC or Entrez gene ID
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18 Select an input file containing ids in a column, set header and column number or copy/paste your ids. 20 Select an input file containing ids in a column, set header and column number or copy/paste your ids.
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20 Select your identifier type and a species of interest (for now only human available). 22 You can import 1 to 3 column(s) of expression values if you are importing ids from a file.
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22 Select one or several pathways of interest from the dropdown menu or copy/paste KEGG pathway id(s) 24 Select a species of interest.
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24 Select the graph format : KEGG or graphviz 26 Select one or several pathways of interest from the dropdown menu or copy/paste KEGG pathway id(s) or import it from a file.
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28 Select the graph format : KEGG (jpg) or graphviz (pdf)
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26 Uniprot accession number converted to Entrez geneID or Entrez geneID are mapped to each selected pathways. 30 Uniprot accession number converted to Entrez geneID or Entrez geneID are mapped to each selected pathways.
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28 Output : One file (png or pdf) for each selected pathway. 32 Output : One file (png or pdf) for each selected pathway.