Mercurial > repos > proteore > proteore_pathview_mapping
comparison README.rst @ 0:097bb3ed2b4d draft
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| author | proteore |
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| date | Wed, 22 Aug 2018 11:30:23 -0400 |
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| children | 33c9bd75882a |
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| 1 Wrapper for Pathview tool | |
| 2 ============================= | |
| 3 | |
| 4 **Authors** | |
| 5 | |
| 6 David Christiany, Florence Combes, Yves Vandenbrouck CEA, INSERM, CNRS, Grenoble-Alpes University, BIG Institute, FR | |
| 7 | |
| 8 Sandra Dérozier, Olivier Rué, Christophe Caron, Valentin Loux INRA, Paris-Saclay University, MAIAGE Unit, Migale Bioinformatics platform | |
| 9 | |
| 10 This work has been partially funded through the French National Agency for Research (ANR) IFB project. | |
| 11 | |
| 12 Contact support@proteore.org for any questions or concerns about the Galaxy implementation of this tool. | |
| 13 | |
| 14 ============================= | |
| 15 | |
| 16 This tool map a list of Uniprot Accession number or Entrez gene ID to KEGG pathway with pathview R package. | |
| 17 | |
| 18 Select an input file containing ids in a column, set header and column number or copy/paste your ids. | |
| 19 | |
| 20 Select your identifier type and a species of interest (for now only human available). | |
| 21 | |
| 22 Select one or several pathways of interest from the dropdown menu or copy/paste KEGG pathway id(s) | |
| 23 | |
| 24 Select the graph format : KEGG or graphviz | |
| 25 | |
| 26 Uniprot accession number converted to Entrez geneID or Entrez geneID are mapped to each selected pathways. | |
| 27 | |
| 28 Output : One file (png or pdf) for each selected pathway. |