Mercurial > repos > proteore > proteore_pathview_mapping

comparison tool-data/rno_pathways.loc @ 12:9fe4a861601b draft

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planemo upload commit 7e2bd28d27e13c402acd46500f64d5c117797aa7-dirty
author proteore
date Fri, 09 Nov 2018 05:11:46 -0500
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11:6d5c0ff2b0bd 12:9fe4a861601b
1 rno00010 Glycolysis / Gluconeogenesis
2 rno00020 Citrate cycle (TCA cycle)
3 rno00030 Pentose phosphate pathway
4 rno00040 Pentose and glucuronate interconversions
5 rno00051 Fructose and mannose metabolism
6 rno00052 Galactose metabolism
7 rno00053 Ascorbate and aldarate metabolism
8 rno00061 Fatty acid biosynthesis
9 rno00062 Fatty acid elongation
10 rno00071 Fatty acid degradation
11 rno00072 Synthesis and degradation of ketone bodies
12 rno00100 Steroid biosynthesis
13 rno00120 Primary bile acid biosynthesis
14 rno00130 Ubiquinone and other terpenoid-quinone biosynthesis
15 rno00140 Steroid hormone biosynthesis
16 rno00190 Oxidative phosphorylation
17 rno00220 Arginine biosynthesis
18 rno00230 Purine metabolism
19 rno00232 Caffeine metabolism
20 rno00240 Pyrimidine metabolism
21 rno00250 Alanine, aspartate and glutamate metabolism
22 rno00260 Glycine, serine and threonine metabolism
23 rno00270 Cysteine and methionine metabolism
24 rno00280 Valine, leucine and isoleucine degradation
25 rno00290 Valine, leucine and isoleucine biosynthesis
26 rno00310 Lysine degradation
27 rno00330 Arginine and proline metabolism
28 rno00340 Histidine metabolism
29 rno00350 Tyrosine metabolism
30 rno00360 Phenylalanine metabolism
31 rno00380 Tryptophan metabolism
32 rno00400 Phenylalanine, tyrosine and tryptophan biosynthesis
33 rno00410 beta-Alanine metabolism
34 rno00430 Taurine and hypotaurine metabolism
35 rno00440 Phosphonate and phosphinate metabolism
36 rno00450 Selenocompound metabolism
37 rno00471 D-Glutamine and D-glutamate metabolism
38 rno00472 D-Arginine and D-ornithine metabolism
39 rno00480 Glutathione metabolism
40 rno00500 Starch and sucrose metabolism
41 rno00510 N-Glycan biosynthesis
42 rno00511 Other glycan degradation
43 rno00512 Mucin type O-glycan biosynthesis
44 rno00514 Other types of O-glycan biosynthesis
45 rno00515 Mannose type O-glycan biosynthesis
46 rno00520 Amino sugar and nucleotide sugar metabolism
47 rno00524 Neomycin, kanamycin and gentamicin biosynthesis
48 rno00531 Glycosaminoglycan degradation
49 rno00532 Glycosaminoglycan biosynthesis
50 rno00533 Glycosaminoglycan biosynthesis
51 rno00534 Glycosaminoglycan biosynthesis
52 rno00561 Glycerolipid metabolism
53 rno00562 Inositol phosphate metabolism
54 rno00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
55 rno00564 Glycerophospholipid metabolism
56 rno00565 Ether lipid metabolism
57 rno00590 Arachidonic acid metabolism
58 rno00591 Linoleic acid metabolism
59 rno00592 alpha-Linolenic acid metabolism
60 rno00600 Sphingolipid metabolism
61 rno00601 Glycosphingolipid biosynthesis
62 rno00603 Glycosphingolipid biosynthesis
63 rno00604 Glycosphingolipid biosynthesis
64 rno00620 Pyruvate metabolism
65 rno00630 Glyoxylate and dicarboxylate metabolism
66 rno00640 Propanoate metabolism
67 rno00650 Butanoate metabolism
68 rno00670 One carbon pool by folate
69 rno00730 Thiamine metabolism
70 rno00740 Riboflavin metabolism
71 rno00750 Vitamin B6 metabolism
72 rno00760 Nicotinate and nicotinamide metabolism
73 rno00770 Pantothenate and CoA biosynthesis
74 rno00780 Biotin metabolism
75 rno00785 Lipoic acid metabolism
76 rno00790 Folate biosynthesis
77 rno00830 Retinol metabolism
78 rno00860 Porphyrin and chlorophyll metabolism
79 rno00900 Terpenoid backbone biosynthesis
80 rno00910 Nitrogen metabolism
81 rno00920 Sulfur metabolism
82 rno00970 Aminoacyl-tRNA biosynthesis
83 rno00980 Metabolism of xenobiotics by cytochrome P450
84 rno00982 Drug metabolism
85 rno00983 Drug metabolism
86 rno01040 Biosynthesis of unsaturated fatty acids
87 rno01100 Metabolic pathways
88 rno01200 Carbon metabolism
89 rno01210 2-Oxocarboxylic acid metabolism
90 rno01212 Fatty acid metabolism
91 rno01230 Biosynthesis of amino acids
92 rno01521 EGFR tyrosine kinase inhibitor resistance
93 rno01522 Endocrine resistance
94 rno01523 Antifolate resistance
95 rno01524 Platinum drug resistance
96 rno02010 ABC transporters
97 rno03008 Ribosome biogenesis in eukaryotes
98 rno03010 Ribosome
99 rno03013 RNA transport
100 rno03015 mRNA surveillance pathway
101 rno03018 RNA degradation
102 rno03020 RNA polymerase
103 rno03022 Basal transcription factors
104 rno03030 DNA replication
105 rno03040 Spliceosome
106 rno03050 Proteasome
107 rno03060 Protein export
108 rno03320 PPAR signaling pathway
109 rno03410 Base excision repair
110 rno03420 Nucleotide excision repair
111 rno03430 Mismatch repair
112 rno03440 Homologous recombination
113 rno03450 Non-homologous end-joining
114 rno03460 Fanconi anemia pathway
115 rno04010 MAPK signaling pathway
116 rno04012 ErbB signaling pathway
117 rno04014 Ras signaling pathway
118 rno04015 Rap1 signaling pathway
119 rno04020 Calcium signaling pathway
120 rno04022 cGMP-PKG signaling pathway
121 rno04024 cAMP signaling pathway
122 rno04060 Cytokine-cytokine receptor interaction
123 rno04062 Chemokine signaling pathway
124 rno04064 NF-kappa B signaling pathway
125 rno04066 HIF-1 signaling pathway
126 rno04068 FoxO signaling pathway
127 rno04070 Phosphatidylinositol signaling system
128 rno04071 Sphingolipid signaling pathway
129 rno04072 Phospholipase D signaling pathway
130 rno04080 Neuroactive ligand-receptor interaction
131 rno04110 Cell cycle
132 rno04114 Oocyte meiosis
133 rno04115 p53 signaling pathway
134 rno04120 Ubiquitin mediated proteolysis
135 rno04122 Sulfur relay system
136 rno04130 SNARE interactions in vesicular transport
137 rno04136 Autophagy
138 rno04137 Mitophagy
139 rno04140 Autophagy
140 rno04141 Protein processing in endoplasmic reticulum
141 rno04142 Lysosome
142 rno04144 Endocytosis
143 rno04145 Phagosome
144 rno04146 Peroxisome
145 rno04150 mTOR signaling pathway
146 rno04151 PI3K-Akt signaling pathway
147 rno04152 AMPK signaling pathway
148 rno04210 Apoptosis
149 rno04211 Longevity regulating pathway
150 rno04213 Longevity regulating pathway
151 rno04215 Apoptosis
152 rno04216 Ferroptosis
153 rno04217 Necroptosis
154 rno04218 Cellular senescence
155 rno04260 Cardiac muscle contraction
156 rno04261 Adrenergic signaling in cardiomyocytes
157 rno04270 Vascular smooth muscle contraction
158 rno04310 Wnt signaling pathway
159 rno04330 Notch signaling pathway
160 rno04340 Hedgehog signaling pathway
161 rno04350 TGF-beta signaling pathway
162 rno04360 Axon guidance
163 rno04370 VEGF signaling pathway
164 rno04371 Apelin signaling pathway
165 rno04380 Osteoclast differentiation
166 rno04390 Hippo signaling pathway
167 rno04392 Hippo signaling pathway
168 rno04510 Focal adhesion
169 rno04512 ECM-receptor interaction
170 rno04514 Cell adhesion molecules (CAMs)
171 rno04520 Adherens junction
172 rno04530 Tight junction
173 rno04540 Gap junction
174 rno04550 Signaling pathways regulating pluripotency of stem cells
175 rno04610 Complement and coagulation cascades
176 rno04611 Platelet activation
177 rno04612 Antigen processing and presentation
178 rno04614 Renin-angiotensin system
179 rno04620 Toll-like receptor signaling pathway
180 rno04621 NOD-like receptor signaling pathway
181 rno04622 RIG-I-like receptor signaling pathway
182 rno04623 Cytosolic DNA-sensing pathway
183 rno04625 C-type lectin receptor signaling pathway
184 rno04630 JAK-STAT signaling pathway
185 rno04640 Hematopoietic cell lineage
186 rno04650 Natural killer cell mediated cytotoxicity
187 rno04657 IL-17 signaling pathway
188 rno04658 Th1 and Th2 cell differentiation
189 rno04659 Th17 cell differentiation
190 rno04660 T cell receptor signaling pathway
191 rno04662 B cell receptor signaling pathway
192 rno04664 Fc epsilon RI signaling pathway
193 rno04666 Fc gamma R-mediated phagocytosis
194 rno04668 TNF signaling pathway
195 rno04670 Leukocyte transendothelial migration
196 rno04672 Intestinal immune network for IgA production
197 rno04710 Circadian rhythm
198 rno04713 Circadian entrainment
199 rno04714 Thermogenesis
200 rno04720 Long-term potentiation
201 rno04721 Synaptic vesicle cycle
202 rno04722 Neurotrophin signaling pathway
203 rno04723 Retrograde endocannabinoid signaling
204 rno04724 Glutamatergic synapse
205 rno04725 Cholinergic synapse
206 rno04726 Serotonergic synapse
207 rno04727 GABAergic synapse
208 rno04728 Dopaminergic synapse
209 rno04730 Long-term depression
210 rno04740 Olfactory transduction
211 rno04742 Taste transduction
212 rno04744 Phototransduction
213 rno04750 Inflammatory mediator regulation of TRP channels
214 rno04810 Regulation of actin cytoskeleton
215 rno04910 Insulin signaling pathway
216 rno04911 Insulin secretion
217 rno04912 GnRH signaling pathway
218 rno04913 Ovarian steroidogenesis
219 rno04914 Progesterone-mediated oocyte maturation
220 rno04915 Estrogen signaling pathway
221 rno04916 Melanogenesis
222 rno04917 Prolactin signaling pathway
223 rno04918 Thyroid hormone synthesis
224 rno04919 Thyroid hormone signaling pathway
225 rno04920 Adipocytokine signaling pathway
226 rno04921 Oxytocin signaling pathway
227 rno04922 Glucagon signaling pathway
228 rno04923 Regulation of lipolysis in adipocytes
229 rno04924 Renin secretion
230 rno04925 Aldosterone synthesis and secretion
231 rno04926 Relaxin signaling pathway
232 rno04927 Cortisol synthesis and secretion
233 rno04928 Parathyroid hormone synthesis, secretion and action
234 rno04930 Type II diabetes mellitus
235 rno04931 Insulin resistance
236 rno04932 Non-alcoholic fatty liver disease (NAFLD)
237 rno04933 AGE-RAGE signaling pathway in diabetic complications
238 rno04934 Cushing syndrome
239 rno04940 Type I diabetes mellitus
240 rno04950 Maturity onset diabetes of the young
241 rno04960 Aldosterone-regulated sodium reabsorption
242 rno04961 Endocrine and other factor-regulated calcium reabsorption
243 rno04962 Vasopressin-regulated water reabsorption
244 rno04964 Proximal tubule bicarbonate reclamation
245 rno04966 Collecting duct acid secretion
246 rno04970 Salivary secretion
247 rno04971 Gastric acid secretion
248 rno04972 Pancreatic secretion
249 rno04973 Carbohydrate digestion and absorption
250 rno04974 Protein digestion and absorption
251 rno04975 Fat digestion and absorption
252 rno04976 Bile secretion
253 rno04977 Vitamin digestion and absorption
254 rno04978 Mineral absorption
255 rno04979 Cholesterol metabolism
256 rno05010 Alzheimer disease
257 rno05012 Parkinson disease
258 rno05014 Amyotrophic lateral sclerosis (ALS)
259 rno05016 Huntington disease
260 rno05020 Prion diseases
261 rno05030 Cocaine addiction
262 rno05031 Amphetamine addiction
263 rno05032 Morphine addiction
264 rno05033 Nicotine addiction
265 rno05034 Alcoholism
266 rno05100 Bacterial invasion of epithelial cells
267 rno05132 Salmonella infection
268 rno05133 Pertussis
269 rno05134 Legionellosis
270 rno05140 Leishmaniasis
271 rno05142 Chagas disease (American trypanosomiasis)
272 rno05143 African trypanosomiasis
273 rno05144 Malaria
274 rno05145 Toxoplasmosis
275 rno05146 Amoebiasis
276 rno05150 Staphylococcus aureus infection
277 rno05152 Tuberculosis
278 rno05160 Hepatitis C
279 rno05161 Hepatitis B
280 rno05162 Measles
281 rno05163 Human cytomegalovirus infection
282 rno05164 Influenza A
283 rno05165 Human papillomavirus infection
284 rno05166 Human T-cell leukemia virus 1 infection
285 rno05167 Kaposi sarcoma-associated herpesvirus infection
286 rno05168 Herpes simplex infection
287 rno05169 Epstein-Barr virus infection
288 rno05170 Human immunodeficiency virus 1 infection
289 rno05200 Pathways in cancer
290 rno05202 Transcriptional misregulation in cancer
291 rno05203 Viral carcinogenesis
292 rno05204 Chemical carcinogenesis
293 rno05205 Proteoglycans in cancer
294 rno05206 MicroRNAs in cancer
295 rno05210 Colorectal cancer
296 rno05211 Renal cell carcinoma
297 rno05212 Pancreatic cancer
298 rno05213 Endometrial cancer
299 rno05214 Glioma
300 rno05215 Prostate cancer
301 rno05216 Thyroid cancer
302 rno05217 Basal cell carcinoma
303 rno05218 Melanoma
304 rno05219 Bladder cancer
305 rno05220 Chronic myeloid leukemia
306 rno05221 Acute myeloid leukemia
307 rno05222 Small cell lung cancer
308 rno05223 Non-small cell lung cancer
309 rno05224 Breast cancer
310 rno05225 Hepatocellular carcinoma
311 rno05226 Gastric cancer
312 rno05230 Central carbon metabolism in cancer
313 rno05231 Choline metabolism in cancer
314 rno05310 Asthma
315 rno05320 Autoimmune thyroid disease
316 rno05321 Inflammatory bowel disease (IBD)
317 rno05322 Systemic lupus erythematosus
318 rno05323 Rheumatoid arthritis
319 rno05330 Allograft rejection
320 rno05332 Graft-versus-host disease
321 rno05340 Primary immunodeficiency
322 rno05410 Hypertrophic cardiomyopathy (HCM)
323 rno05412 Arrhythmogenic right ventricular cardiomyopathy (ARVC)
324 rno05414 Dilated cardiomyopathy (DCM)
325 rno05416 Viral myocarditis
326 rno05418 Fluid shear stress and atherosclerosis