Mercurial > repos > proteore > proteore_maps_visualization
comparison kegg_maps_visualization.R @ 11:7d04efde2526 draft
"planemo upload commit 1f9a98db2496834cc38a281cbe3d4b11de2bc3d2-dirty"
| author | proteore |
|---|---|
| date | Thu, 05 Mar 2020 13:45:08 +0000 |
| parents | a4db9efe1e43 |
| children | 10c572ad2b9e |
comparison
equal
deleted
inserted
replaced
| 10:a4db9efe1e43 | 11:7d04efde2526 |
|---|---|
| 170 } | 170 } |
| 171 return(res) | 171 return(res) |
| 172 } | 172 } |
| 173 | 173 |
| 174 get_limit <- function(mat) { | 174 get_limit <- function(mat) { |
| 175 min = min(apply(mat,2,min)) | 175 min = min(apply(mat,2,min,na.rm=TRUE)) |
| 176 max = max(apply(mat,2,max)) | 176 max = max(apply(mat,2,max,na.rm=TRUE)) |
| 177 return(c(min,max)) | 177 return(c(min,max)) |
| 178 } | 178 } |
| 179 | 179 |
| 180 check_pathway_ids<- function(pathways_ids) { | 180 check_pathway_ids<- function(pathways_ids) { |
| 181 problematic_pathways <- c("04215","04723") | 181 problematic_pathways <- c("04215","04723") |