Mercurial > repos > proteore > proteore_expression_rnaseq_abbased
changeset 8:c9e48832420b draft
"planemo upload commit 330a2527c7e20c4d189a0f1b7a184a8c4610b4b6-dirty"
| author | proteore |
|---|---|
| date | Wed, 22 Jan 2020 15:11:58 +0000 |
| parents | fda784211e3a |
| children | 28d51adf8292 |
| files | add_expression_data.xml |
| diffstat | 1 files changed, 9 insertions(+), 4 deletions(-) [+] |
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--- a/add_expression_data.xml Wed Jan 22 14:59:04 2020 +0000 +++ b/add_expression_data.xml Wed Jan 22 15:11:58 2020 +0000 @@ -1,4 +1,4 @@ -<tool id="rna_abbased_data" name="Add expression data" version="2020.01.22"> +<tool id="rna_abbased_data" name="Add expression data" version="2020.01.22.1"> <description> (RNAseq or Immuno-assays)[Human Protein Atlas] </description> <requirements> @@ -22,15 +22,20 @@ --column='$inputtype.column' #end if - #if "protein_atlas" in str($input.ref_file).split("/") - --hpa_ref="$input.ref_file" + #if "protein_atlas" in str($ref_file).split("/") + --hpa_ref="$ref_file" #else - --hpa_ref="$__tool_directory__/$input.ref_file" + --hpa_ref="$__tool_directory__/$ref_file" #end if ]]></command> <inputs> + <param name="ref_file" type="select" label="HPA source file version" > + <options from_data_table="proteore_protein_full_atlas"> + <filter type="sort_by" column="0"/> + </options> + </param> <conditional name="inputtype"> <param name="filetype" type="select" label="Enter your IDs (Ensembl gene IDs only, e.g. ENSG00000064787)" help="Copy/paste or from a file (e.g. table)"> <option value="file_all" selected="true">Input file containing your IDs</option>