Mercurial > repos > proteore > proteore_expression_rnaseq_abbased

comparison add_expression_HPA.R @ 9:28d51adf8292 draft

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"planemo upload commit 330a2527c7e20c4d189a0f1b7a184a8c4610b4b6-dirty"
author proteore
date Wed, 22 Jan 2020 15:20:35 +0000
parents fda784211e3a
children 07858c6dbbff
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8:c9e48832420b 9:28d51adf8292
173 ids = ids[which(!is.na(ids))] 173 ids = ids[which(!is.na(ids))]
174 } 174 }
175 check_ensembl_geneids(ids) 175 check_ensembl_geneids(ids)
176 176
177 # Read protein atlas 177 # Read protein atlas
178 protein_atlas = read_file(args$atlas, T) 178 protein_atlas = args$atlas
179 protein_atlas = read_file(protein_atlas, T)
179 180
180 # Add expression 181 # Add expression
181 output = args$output 182 output = args$output
182 options = strsplit(args$select, ",")[[1]] 183 options = strsplit(args$select, ",")[[1]]
183 res = add_expression(ids, protein_atlas, options) 184 res = add_expression(ids, protein_atlas, options)