Mercurial > repos > proteore > proteore_data_manager

changeset 19:ff724e70dae0 draft

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planemo upload commit 04868e380c43447fac1309fc292785d67863a87b-dirty
author proteore
date Mon, 06 May 2019 05:01:21 -0400
parents 8ddd9d47e7ce
children 29cf75c83618
files data_manager/resource_building.xml tool-data/proteore_peptide_atlas.loc.sample tool_data_table_conf.xml.sample
diffstat 3 files changed, 51 insertions(+), 41 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager/resource_building.xml	Fri May 03 09:59:42 2019 -0400
+++ b/data_manager/resource_building.xml	Mon May 06 05:01:21 2019 -0400
@@ -1,4 +1,4 @@
-<tool id="data_manager_proteore" name="Get source files for proteore tools" version="2019.05.03.01" tool_type="manage_data">
+<tool id="data_manager_proteore" name="Get source files for proteore tools" version="2019.05.05" tool_type="manage_data">
 <description>
 to create or update reference files for proteore tools
 </description>
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool-data/proteore_peptide_atlas.loc.sample	Mon May 06 05:01:21 2019 -0400
@@ -0,0 +1,10 @@
+#This file lists the locations name and values of reference files for number of MS/MS observations in a tissue
+#This is a tab separated file (TAB, not 4 spaces !)
+#<id>	<name>	<tissue>	<value>
+#Human_Heart_20-07-2018	Human Heart 20/07/2018	Human_Heart	/projet/galaxydev/galaxy/tool-data/peptide_atlas/Human_Heart_20-07-2018.tsv
+#Human_Liver_20-07-2018	Human Liver 20/07/2018	Human_Liver	/projet/galaxydev/galaxy/tool-data/peptide_atlas/Human_Liver_20-07-2018.tsv
+#Human_Urine_20-07-2018	Human Urine 20/07/2018	Human_Urine	/projet/galaxydev/galaxy/tool-data/peptide_atlas/Human_Urine_20-07-2018.tsv
+#Human_Brain_20-07-2018	Human Brain 20/07/2018	Human_Brain	/projet/galaxydev/galaxy/tool-data/peptide_atlas/Human_Brain_20-07-2018.tsv
+#Human_Kidney_20-07-2018	Human Kidney 20/07/2018	Human_Kidney	/projet/galaxydev/galaxy/tool-data/peptide_atlas/Human_Kidney_20-07-2018.tsv
+#Human_Plasma_20-07-2018	Human Plasma 20/07/2018	Human_Plasma	/projet/galaxydev/galaxy/tool-data/peptide_atlas/Human_Plasma_20-07-2018.tsv
+#Human_CSF_20-07-2018	Human CSF 20/07/2018	Human_CSF	/projet/galaxydev/galaxy/tool-data/peptide_atlas/Human_CSF_20-07-2018.tsv
--- a/tool_data_table_conf.xml.sample	Fri May 03 09:59:42 2019 -0400
+++ b/tool_data_table_conf.xml.sample	Mon May 06 05:01:21 2019 -0400
@@ -1,43 +1,43 @@
 <?xml version="1.0"?>
 <tables>
-    <table name="proteore_peptide_atlas" comment_char="#">
-      <columns>id, name, tissue, value</columns>
-      <file path="tool-data/proteore_peptide_atlas.loc"/>
-    </table>
-    <table name="proteore_protein_atlas_normal_tissue" comment_char="#">
-      <columns>id, name, tissue, value</columns>
-      <file path="tool-data/proteore_protein_atlas_normal_tissue.loc" />
-    </table>
-    <table name="proteore_protein_atlas_tumor_tissue" comment_char="#">
-      <columns>id, name, tissue, value</columns>
-      <file path="tool-data/proteore_protein_atlas_tumor_tissue.loc" />
-    </table>
-    <table name="proteore_id_mapping_Human" comment_char="#">
-      <columns>id, name, species, value</columns>
-      <file path="tool-data/proteore_id_mapping_Human.loc" />
-    </table>
-    <table name="proteore_id_mapping_Mouse" comment_char="#">
-      <columns>id, name, species, value</columns>
-      <file path="tool-data/proteore_id_mapping_Mouse.loc" />
-    </table>
-    <table name="proteore_id_mapping_Rat" comment_char="#">
-      <columns>id, name, species, value</columns>
-      <file path="tool-data/proteore_id_mapping_Rat.loc" />
-    </table>
-    <table name="proteore_biogrid_dictionaries" comment_char="#">
-      <columns>id, name, species, value</columns>
-      <file path="tool-data/proteore_biogrid_dictionaries.loc" />
-    </table>
-    <table name="proteore_bioplex_dictionaries" comment_char="#">
-      <columns>id, name, species, value</columns>
-      <file path="tool-data/proteore_bioplex_dictionaries.loc" />
-    </table>
-    <table name="proteore_humap_dictionaries" comment_char="#">
-      <columns>id, name, species, value</columns>
-      <file path="tool-data/proteore_humap_dictionaries.loc" />
-    </table>
-    <table name='proteore_nextprot_ref' comment_char="#">
-      <columns>id, name, value</columns>
-      <file path="tool-data/proteore_nextprot_ref.loc"/>
-    </table>
+  <table name="proteore_peptide_atlas" comment_char="#">
+    <columns>id, name, tissue, value</columns>
+    <file path="tool-data/proteore_peptide_atlas.loc"/>
+  </table>
+  <table name="proteore_protein_atlas_normal_tissue" comment_char="#">
+    <columns>id, name, tissue, value</columns>
+    <file path="tool-data/proteore_protein_atlas_normal_tissue.loc" />
+  </table>
+  <table name="proteore_protein_atlas_tumor_tissue" comment_char="#">
+    <columns>id, name, tissue, value</columns>
+    <file path="tool-data/proteore_protein_atlas_tumor_tissue.loc" />
+  </table>
+  <table name="proteore_id_mapping_Human" comment_char="#">
+    <columns>id, name, species, value</columns>
+    <file path="tool-data/proteore_id_mapping_Human.loc" />
+  </table>
+  <table name="proteore_id_mapping_Mouse" comment_char="#">
+    <columns>id, name, species, value</columns>
+    <file path="tool-data/proteore_id_mapping_Mouse.loc" />
+  </table>
+  <table name="proteore_id_mapping_Rat" comment_char="#">
+    <columns>id, name, species, value</columns>
+    <file path="tool-data/proteore_id_mapping_Rat.loc" />
+  </table>
+  <table name="proteore_biogrid_dictionaries" comment_char="#">
+    <columns>id, name, species, value</columns>
+    <file path="tool-data/proteore_biogrid_dictionaries.loc" />
+  </table>
+  <table name="proteore_bioplex_dictionaries" comment_char="#">
+    <columns>id, name, species, value</columns>
+    <file path="tool-data/proteore_bioplex_dictionaries.loc" />
+  </table>
+  <table name="proteore_humap_dictionaries" comment_char="#">
+    <columns>id, name, species, value</columns>
+    <file path="tool-data/proteore_humap_dictionaries.loc" />
+  </table>
+  <table name='proteore_nextprot_ref' comment_char="#">
+    <columns>id, name, value</columns>
+    <file path="tool-data/proteore_nextprot_ref.loc"/>
+  </table>
 </tables>