Mercurial > repos > proteore > proteore_data_manager

changeset 41:fe21769281fa draft

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"planemo upload commit ba867b8fa3352695fbda1ae764407f363ee79a50-dirty"
author proteore
date Wed, 08 Jan 2020 13:44:22 +0000
parents a7bcc9a0a456
children f6a6a70712c4
files data_manager/resource_building.py data_manager/resource_building.xml
diffstat 2 files changed, 4 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager/resource_building.py	Wed Jan 08 13:28:05 2020 +0000
+++ b/data_manager/resource_building.py	Wed Jan 08 13:44:22 2020 +0000
@@ -150,7 +150,7 @@
         tab_reader = csv.reader(select,delimiter="\t")
         for line in tab_reader :
             tab.append([line[0]]+[line[i] for i in [0,1,2,3,4,5,6,11,13,14,18,19,20]])
-    if os.path.exists(os.path.join(archive,tab_path[-1])) : os.remove(os.path.join(archive,tab_path[-1]))
+    if os.path.exists(os.path.join(archive,tab_path.split("/")[-1])) : os.remove(os.path.join(archive,tab_path.split("/")[-1]))
     shutil.move(tab_path, archive)
     #print("selected_tab ok")
 
@@ -202,7 +202,7 @@
                         unidict[uniprotID].update({ id_type : cor_id })
                 elif  id_type in ids :
                     unidict[uniprotID]={id_type : cor_id}
-    if os.path.exists(os.path.join(archive,dat_path[-1])) : os.remove(os.path.join(archive,dat_path[-1]))
+    if os.path.exists(os.path.join(archive,dat_path.split("/")[-1])) : os.remove(os.path.join(archive,dat_path.split("/")[-1]))
     shutil.move(dat_path, archive)
 
     #print("dat_file ok")
@@ -233,7 +233,7 @@
         nextprot_path = id_list_from_nextprot_ftp("nextprot_ac_list_all.txt",target_directory)
         with open(nextprot_path,'r') as nextprot_ids :
             nextprot_ids = nextprot_ids.read().splitlines()
-        if os.path.exists(os.path.join(archive,nextprot_path[-1])) : os.remove(os.path.join(archive,nextprot_path[-1]))
+        if os.path.exists(os.path.join(archive,nextprot_path.split("/")[-1])) : os.remove(os.path.join(archive,nextprot_path.split("/")[-1]))
         shutil.move(nextprot_path,archive)
         next_dict = {}
         for nextid in nextprot_ids : 
--- a/data_manager/resource_building.xml	Wed Jan 08 13:28:05 2020 +0000
+++ b/data_manager/resource_building.xml	Wed Jan 08 13:44:22 2020 +0000
@@ -1,4 +1,4 @@
-<tool id="data_manager_proteore" name="Get source files for proteore tools" version="2020.01.08.9" tool_type="manage_data">
+<tool id="data_manager_proteore" name="Get source files for proteore tools" version="2020.01.08.10" tool_type="manage_data">
 <description>
 to create or update reference files for proteore tools
 </description>