Mercurial > repos > proteore > proteore_data_manager
changeset 65:64b2d53be08b draft default tip
"planemo upload commit b218f949aa7a17b1e75a35946a3a19194bf168f3-dirty"
| author | proteore |
|---|---|
| date | Fri, 31 Jul 2020 14:02:26 +0000 |
| parents | 570519e1d968 |
| children | |
| files | data_manager/resource_building.py data_manager/resource_building.xml |
| diffstat | 2 files changed, 3 insertions(+), 3 deletions(-) [+] |
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--- a/data_manager/resource_building.py Thu Jul 30 13:06:57 2020 +0000 +++ b/data_manager/resource_building.py Fri Jul 31 14:02:26 2020 +0000 @@ -557,7 +557,7 @@ output = open('test.csv', 'w') writer = csv.writer(output,delimiter="\t") - nextprot_file=[["NextprotID","MW","SeqLength","IsoPoint","Chr","SubcellLocations","Diseases","TMDomains","ProteinExistence","ProteinName","Function","PostTranslationalModifications","ProteinFamily","Pathway"]] + nextprot_file=[["NextprotID","ProteinName","SeqLength","MW","IsoPoint","TMDomains","SubcellLocations","Diseases","Function","PostTranslationalModifications","ProteinFamily","Pathway","ProteinExistence","Chr"]] writer.writerows(nextprot_file) for id in ids : @@ -644,7 +644,7 @@ #print (nb_domains) nextprot_file[:] = [] - nextprot_file.append([id,mass_mol,str(seq_length),iso_elec_point,chr_loc,all_subcell_locs,all_diseases,str(nb_domains),protein_existence,protein_name,function,post_trans_mod,protein_family,pathway]) + nextprot_file.append([id,protein_name,str(seq_length),mass_mol,iso_elec_point,str(nb_domains),all_subcell_locs,all_diseases,function,post_trans_mod,protein_family,pathway,protein_existence,chr_loc]) writer.writerows(nextprot_file) id = str(10000000000 - int(time.strftime("%Y%m%d")))
--- a/data_manager/resource_building.xml Thu Jul 30 13:06:57 2020 +0000 +++ b/data_manager/resource_building.xml Fri Jul 31 14:02:26 2020 +0000 @@ -1,4 +1,4 @@ -<tool id="data_manager_proteore" name="Get source files for proteore tools" version="2020.07.30" tool_type="manage_data"> +<tool id="data_manager_proteore" name="Get source files for proteore tools" version="2020.07.31" tool_type="manage_data"> <description> to create or update reference files for proteore tools </description>