Mercurial > repos > proteore > proteore_data_manager

diff data_manager_conf.xml @ 10:e6b8f0e5fe16 draft

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planemo upload commit 567ba7934c0ca55529dfeb5e7ca0935ace260ad7-dirty
author proteore
date Wed, 13 Mar 2019 06:09:49 -0400
parents 77db6c42a212
children 026177e4ff4b
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line diff
--- a/data_manager_conf.xml	Tue Mar 12 06:40:37 2019 -0400
+++ b/data_manager_conf.xml	Wed Mar 13 06:09:49 2019 -0400
@@ -1,6 +1,21 @@
 <?xml version="1.0"?>
 <data_managers>
     <data_manager tool_file="data_manager/resource_building.xml" id="resource_building">
+        <data_table name="proteore_peptide_atlas">
+            <output>
+                <column name="id"/>
+                <column name="name" />
+                <column name="tissue" />
+                <column name="value" output_ref="output" >
+                    <move type="file">
+                        <!--source>${path}/${value}.tsv</source-->
+                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">peptide_atlas/</target>
+                    </move>
+                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/peptide_atlas/${id}.tsv</value_translation>
+                    <value_translation type="function">abspath</value_translation>
+                </column>
+            </output>
+        </data_table>
         <data_table name="proteore_protein_atlas_normal_tissue">
             <output>
                 <column name="id"/>