Mercurial > repos > proteore > proteore_data_manager

comparison data_manager_conf.xml @ 10:e6b8f0e5fe16 draft

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planemo upload commit 567ba7934c0ca55529dfeb5e7ca0935ace260ad7-dirty
author proteore
date Wed, 13 Mar 2019 06:09:49 -0400
parents 77db6c42a212
children 026177e4ff4b
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9:cdd29444e0af 10:e6b8f0e5fe16
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <data_managers> 2 <data_managers>
3 <data_manager tool_file="data_manager/resource_building.xml" id="resource_building"> 3 <data_manager tool_file="data_manager/resource_building.xml" id="resource_building">
4 <data_table name="proteore_peptide_atlas">
5 <output>
6 <column name="id"/>
7 <column name="name" />
8 <column name="tissue" />
9 <column name="value" output_ref="output" >
10 <move type="file">
11 <!--source>${path}/${value}.tsv</source-->
12 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">peptide_atlas/</target>
13 </move>
14 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/peptide_atlas/${id}.tsv</value_translation>
15 <value_translation type="function">abspath</value_translation>
16 </column>
17 </output>
18 </data_table>
4 <data_table name="proteore_protein_atlas_normal_tissue"> 19 <data_table name="proteore_protein_atlas_normal_tissue">
5 <output> 20 <output>
6 <column name="id"/> 21 <column name="id"/>
7 <column name="name" /> 22 <column name="name" />
8 <column name="tissue" /> 23 <column name="tissue" />