Mercurial > repos > proteore > proteore_data_manager

diff data_manager/resource_building.py @ 22:4296fb613d9d draft

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planemo upload commit e05ccbf13c33b97ab441e2f8bc4b5bc746a378df-dirty
author proteore
date Tue, 07 May 2019 10:29:13 -0400
parents 026177e4ff4b
children ebdd4961c6c2
line wrap: on
line diff
--- a/data_manager/resource_building.py	Tue May 07 10:17:48 2019 -0400
+++ b/data_manager/resource_building.py	Tue May 07 10:29:13 2019 -0400
@@ -152,7 +152,8 @@
     #print("selected_tab ok")
 
     #get uniprot-AC reviewed
-    query = "https://www.uniprot.org/uniprot/?query=reviewed:yes+AND+organism:"+species_dict[species]+"&format=list"
+    organism = species_dict[species].split("_")[1]
+    query = "https://www.uniprot.org/uniprot/?query=reviewed:yes+AND+organism:"+organism+"&format=list"
 
     with requests.Session() as s:
         download = s.get(query)