Mercurial > repos > proteore > proteore_data_manager

diff data_manager/resource_building.py @ 35:06103d45814d draft

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"planemo upload commit ba867b8fa3352695fbda1ae764407f363ee79a50-dirty"
author proteore
date Wed, 08 Jan 2020 10:17:18 +0000
parents 06b3181206b4
children b18cb0d11971
line wrap: on
line diff
--- a/data_manager/resource_building.py	Wed Jan 08 10:13:01 2020 +0000
+++ b/data_manager/resource_building.py	Wed Jan 08 10:17:18 2020 +0000
@@ -137,7 +137,7 @@
     species_dict = { "Human" : "HUMAN_9606", "Mouse" : "MOUSE_10090", "Rat" : "RAT_10116" }
     files=["idmapping_selected.tab.gz","idmapping.dat.gz"]
     archive = os.path.join(tool_data_path, "ID_mapping_archive_"+species+"_"+str(time.strftime("%Y%m%d")))
-    os.mkdir(archive)
+    if os.path.isfile is False : os.mkdir(archive)
 
     #header
     if human : tab = [["UniProt-AC","UniProt-AC_reviewed","UniProt-ID","GeneID","RefSeq","GI","PDB","GO","PIR","MIM","UniGene","Ensembl_Gene","Ensembl_Transcript","Ensembl_Protein","neXtProt","BioGrid","STRING","KEGG",'Gene_Name']]