Mercurial > repos > proteore > proteore_data_manager

comparison data_manager_conf.xml @ 0:0a26460d7366 draft

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planemo upload commit dbc027f59706f5b7d3f9f9319f2652baa50e2df5-dirty
author proteore
date Mon, 04 Mar 2019 05:03:04 -0500
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children 0915249b8c4b
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-1:000000000000 0:0a26460d7366
1 <?xml version="1.0"?>
2 <data_managers>
3 <data_manager tool_file="data_manager/resource_building.xml" id="resource_building">
4 <data_table name="proteore_protein_atlas">
5 <output>
6 <column name="id"/>
7 <column name="name" />
8 <column name="tissue" />
9 <column name="value" output_ref="output" >
10 <move type="file">
11 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">protein_atlas/</target>
12 </move>
13 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/protein_atlas/${id}.tsv</value_translation>
14 <value_translation type="function">abspath</value_translation>
15 </column>
16 </output>
17 </data_table>
18 <data_table name="proteore_peptide_atlas">
19 <output>
20 <column name="id"/>
21 <column name="name" />
22 <column name="tissue" />
23 <column name="value" output_ref="output" >
24 <move type="file">
25 <!--source>${path}/${value}.tsv</source-->
26 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">peptide_atlas/</target>
27 </move>
28 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/peptide_atlas/${id}.tsv</value_translation>
29 <value_translation type="function">abspath</value_translation>
30 </column>
31 </output>
32 </data_table>
33 <data_table name="proteore_id_mapping">
34 <output>
35 <column name="id" />
36 <column name="name" />
37 <column name="value" />
38 <column name="path" output_ref="output" >
39 <move type="file">
40 <!--source>${path}</source-->
41 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">id_mapping/</target>
42 </move>
43 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/id_mapping/${id}.tsv</value_translation>
44 <value_translation type="function">abspath</value_translation>
45 </column>
46 </output>
47 </data_table>
48 <data_table name="proteore_biogrid_dictionaries">
49 <output>
50 <column name="id" />
51 <column name="name" />
52 <column name="species" />
53 <column name="value" output_ref="output" >
54 <move type="file">
55 <!--source>${path}</source-->
56 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">PPI_dictionaries/</target>
57 </move>
58 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/PPI_dictionaries/${id}.json</value_translation>
59 <value_translation type="function">abspath</value_translation>
60 </column>
61 </output>
62 </data_table>
63 <data_table name="proteore_bioplex_dictionaries">
64 <output>
65 <column name="id" />
66 <column name="name" />
67 <column name="species" />
68 <column name="value" output_ref="output" >
69 <move type="file">
70 <!--source>${path}</source-->
71 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">PPI_dictionaries/</target>
72 </move>
73 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/PPI_dictionaries/${id}.json</value_translation>
74 <value_translation type="function">abspath</value_translation>
75 </column>
76 </output>
77 </data_table>
78 <data_table name="proteore_humap_dictionaries">
79 <output>
80 <column name="id" />
81 <column name="name" />
82 <column name="species" />
83 <column name="value" output_ref="output" >
84 <move type="file">
85 <!--source>${path}</source-->
86 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">PPI_dictionaries/</target>
87 </move>
88 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/PPI_dictionaries/${id}.json</value_translation>
89 <value_translation type="function">abspath</value_translation>
90 </column>
91 </output>
92 </data_table>
93 </data_manager>
94 </data_managers>