Mercurial > repos > proteore > proteore_data_manager
diff data_manager_conf.xml @ 0:0a26460d7366 draft
planemo upload commit dbc027f59706f5b7d3f9f9319f2652baa50e2df5-dirty
| author | proteore |
|---|---|
| date | Mon, 04 Mar 2019 05:03:04 -0500 |
| parents | |
| children | 0915249b8c4b |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/data_manager_conf.xml Mon Mar 04 05:03:04 2019 -0500 @@ -0,0 +1,94 @@ +<?xml version="1.0"?> +<data_managers> + <data_manager tool_file="data_manager/resource_building.xml" id="resource_building"> + <data_table name="proteore_protein_atlas"> + <output> + <column name="id"/> + <column name="name" /> + <column name="tissue" /> + <column name="value" output_ref="output" > + <move type="file"> + <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">protein_atlas/</target> + </move> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/protein_atlas/${id}.tsv</value_translation> + <value_translation type="function">abspath</value_translation> + </column> + </output> + </data_table> + <data_table name="proteore_peptide_atlas"> + <output> + <column name="id"/> + <column name="name" /> + <column name="tissue" /> + <column name="value" output_ref="output" > + <move type="file"> + <!--source>${path}/${value}.tsv</source--> + <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">peptide_atlas/</target> + </move> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/peptide_atlas/${id}.tsv</value_translation> + <value_translation type="function">abspath</value_translation> + </column> + </output> + </data_table> + <data_table name="proteore_id_mapping"> + <output> + <column name="id" /> + <column name="name" /> + <column name="value" /> + <column name="path" output_ref="output" > + <move type="file"> + <!--source>${path}</source--> + <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">id_mapping/</target> + </move> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/id_mapping/${id}.tsv</value_translation> + <value_translation type="function">abspath</value_translation> + </column> + </output> + </data_table> + <data_table name="proteore_biogrid_dictionaries"> + <output> + <column name="id" /> + <column name="name" /> + <column name="species" /> + <column name="value" output_ref="output" > + <move type="file"> + <!--source>${path}</source--> + <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">PPI_dictionaries/</target> + </move> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/PPI_dictionaries/${id}.json</value_translation> + <value_translation type="function">abspath</value_translation> + </column> + </output> + </data_table> + <data_table name="proteore_bioplex_dictionaries"> + <output> + <column name="id" /> + <column name="name" /> + <column name="species" /> + <column name="value" output_ref="output" > + <move type="file"> + <!--source>${path}</source--> + <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">PPI_dictionaries/</target> + </move> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/PPI_dictionaries/${id}.json</value_translation> + <value_translation type="function">abspath</value_translation> + </column> + </output> + </data_table> + <data_table name="proteore_humap_dictionaries"> + <output> + <column name="id" /> + <column name="name" /> + <column name="species" /> + <column name="value" output_ref="output" > + <move type="file"> + <!--source>${path}</source--> + <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">PPI_dictionaries/</target> + </move> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/PPI_dictionaries/${id}.json</value_translation> + <value_translation type="function">abspath</value_translation> + </column> + </output> + </data_table> + </data_manager> +</data_managers>