Mercurial > repos > proteore > proteore_clusterprofiler
changeset 27:54f8e6f5c59d draft
planemo upload commit d884b75cfc292105807c42c58f864d536dc9e431-dirty
| author | proteore |
|---|---|
| date | Wed, 21 Nov 2018 08:53:49 -0500 |
| parents | c8bff18c102b |
| children | eafb37258a6f |
| files | GO-enrich.R cluster_profiler.xml |
| diffstat | 2 files changed, 3 insertions(+), 1 deletions(-) [+] |
line wrap: on
line diff
--- a/GO-enrich.R Wed Nov 21 08:22:13 2018 -0500 +++ b/GO-enrich.R Wed Nov 21 08:53:49 2018 -0500 @@ -60,6 +60,7 @@ p <- barplot(ggo, showCategory=10) print(p) dev.off() + ggo <- as.data.frame(ggo) return(ggo) } } @@ -99,6 +100,7 @@ dev.off() } + ego <- as.data.frame(ego) return(ego) } else { warning(paste("No Go terms enriched (EGO) found for ",ontology,"ontology"),immediate. = TRUE,noBreaks. = TRUE,call. = FALSE)
--- a/cluster_profiler.xml Wed Nov 21 08:22:13 2018 -0500 +++ b/cluster_profiler.xml Wed Nov 21 08:53:49 2018 -0500 @@ -1,4 +1,4 @@ -<tool id="cluter_profiler" name="GO terms classification and enrichment analysis" version="2018.11.21"> +<tool id="cluter_profiler" name="GO terms classification and enrichment analysis" version="2018.11.21.2"> <description>(Human, Mouse, Rat) (clusterProfiler)</description> <requirements> <requirement type="package" version="3.4.1">R</requirement>