# HG changeset patch # User proteore # Date 1542808429 18000 # Node ID 54f8e6f5c59dfd3dd3e04ede2d9df28d0cb0c639 # Parent c8bff18c102b372cf4fd2f73cbdefa847080c7de planemo upload commit d884b75cfc292105807c42c58f864d536dc9e431-dirty diff -r c8bff18c102b -r 54f8e6f5c59d GO-enrich.R --- a/GO-enrich.R Wed Nov 21 08:22:13 2018 -0500 +++ b/GO-enrich.R Wed Nov 21 08:53:49 2018 -0500 @@ -60,6 +60,7 @@ p <- barplot(ggo, showCategory=10) print(p) dev.off() + ggo <- as.data.frame(ggo) return(ggo) } } @@ -99,6 +100,7 @@ dev.off() } + ego <- as.data.frame(ego) return(ego) } else { warning(paste("No Go terms enriched (EGO) found for ",ontology,"ontology"),immediate. = TRUE,noBreaks. = TRUE,call. = FALSE) diff -r c8bff18c102b -r 54f8e6f5c59d cluster_profiler.xml --- a/cluster_profiler.xml Wed Nov 21 08:22:13 2018 -0500 +++ b/cluster_profiler.xml Wed Nov 21 08:53:49 2018 -0500 @@ -1,4 +1,4 @@ - + (Human, Mouse, Rat) (clusterProfiler) R