Mercurial > repos > proteore > proteore_clusterprofiler

changeset 24:267ee3760721 draft

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planemo upload commit a1f29af18fb9b5164846c59c9e0462227a0dd5d9-dirty
author proteore
date Tue, 06 Nov 2018 03:56:00 -0500
parents 879367568ea6
children 3a66e1e65c02
files GO-enrich.R cluster_profiler.xml
diffstat 2 files changed, 3 insertions(+), 6 deletions(-) [+]
line wrap: on
line diff
--- a/GO-enrich.R	Fri Oct 05 09:16:47 2018 -0400
+++ b/GO-enrich.R	Tue Nov 06 03:56:00 2018 -0500
@@ -201,8 +201,7 @@
   } else if (id_type=="Entrez" & any(check_ids(input,"entrez"))) {
     gene<-unique(input)
   } else {
-    print(paste(id_type,"not found in your ids list, please check your IDs in input or the selected column of your input file"))
-    stop()
+    stop(paste(id_type,"not found in your ids list, please check your IDs in input or the selected column of your input file"))
   }
 
   ontology <- strsplit(args$onto_opt, ",")[[1]]
--- a/cluster_profiler.xml	Fri Oct 05 09:16:47 2018 -0400
+++ b/cluster_profiler.xml	Tue Nov 06 03:56:00 2018 -0500
@@ -1,7 +1,5 @@
-<tool id="cluter_profiler" name="clusterProfiler" version="2018.10.05">
-    <description>
-    GO terms classification and enrichment analysis
-    </description>
+<tool id="cluter_profiler" name="GO terms classification and enrichment analysis" version="2018.11.06">
+    <description>(Human, Mouse, Rat) (clusterProfiler)</description>
     <requirements>
         <requirement type="package" version="3.4.1">R</requirement>
         <requirement type="package" version="3.5.0">bioconductor-org.hs.eg.db</requirement>