Mercurial > repos > proteore > proteore_clusterprofiler

changeset 13:1d6095094e5f draft

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planemo upload commit 3305e0bef3621ca618b08e9f2fa79e55ecd11595-dirty
author proteore
date Tue, 25 Sep 2018 08:58:30 -0400
parents 7a5814f0392a
children 0e3ac8fc061c
files GO-enrich.R cluster_profiler.xml
diffstat 2 files changed, 2 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/GO-enrich.R	Tue Sep 25 08:20:45 2018 -0400
+++ b/GO-enrich.R	Tue Sep 25 08:58:30 2018 -0400
@@ -68,7 +68,6 @@
                 universe=universe,
                 OrgDb=orgdb,
                 ont=ontology,
-                keytype="ENTREZID",
                 pAdjustMethod="BH",
                 pvalueCutoff=pval_cutoff,
                 qvalueCutoff=qval_cutoff,
--- a/cluster_profiler.xml	Tue Sep 25 08:20:45 2018 -0400
+++ b/cluster_profiler.xml	Tue Sep 25 08:58:30 2018 -0400
@@ -1,4 +1,4 @@
-<tool id="cluter_profiler" name="clusterProfiler" version="2018.09.25.2">
+<tool id="cluter_profiler" name="clusterProfiler" version="2018.09.25.3">
     <description>
     GO terms classification and enrichment analysis
     </description>
@@ -8,7 +8,7 @@
         <requirement type="package" version="3.5.0">bioconductor-org.mm.eg.db</requirement>
         <requirement type="package" version="3.5.0">bioconductor-org.rn.eg.db</requirement>
         <requirement type="package" version="3.4.0">bioconductor-dose</requirement>
-        <requirement type="package" version="3.4.4">bioconductor-clusterprofiler</requirement>
+        <requirement type="package" version="3.6.0">bioconductor-clusterprofiler</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
         Rscript "$__tool_directory__/GO-enrich.R"