Mercurial > repos > proteore > proteore_clusterprofiler

comparison GO-enrich.R @ 13:1d6095094e5f draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload commit 3305e0bef3621ca618b08e9f2fa79e55ecd11595-dirty
author proteore
date Tue, 25 Sep 2018 08:58:30 -0400
parents 6604d9aa7cf3
children a91d407e1938
comparison
equal deleted inserted replaced
12:7a5814f0392a 13:1d6095094e5f
66 enrich.GO <- function(geneid, universe, orgdb, ontology, pval_cutoff, qval_cutoff,plot) { 66 enrich.GO <- function(geneid, universe, orgdb, ontology, pval_cutoff, qval_cutoff,plot) {
67 ego<-enrichGO(gene=geneid, 67 ego<-enrichGO(gene=geneid,
68 universe=universe, 68 universe=universe,
69 OrgDb=orgdb, 69 OrgDb=orgdb,
70 ont=ontology, 70 ont=ontology,
71 keytype="ENTREZID",
72 pAdjustMethod="BH", 71 pAdjustMethod="BH",
73 pvalueCutoff=pval_cutoff, 72 pvalueCutoff=pval_cutoff,
74 qvalueCutoff=qval_cutoff, 73 qvalueCutoff=qval_cutoff,
75 readable=TRUE) 74 readable=TRUE)
76 75