Mercurial > repos > pjbriggs > rnachipintegrator

diff tool_dependencies.xml @ 0:0abe6bac47a6 draft

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planemo upload for repository https://github.com/fls-bioinformatics-core/galaxy-tools/tree/master/rnachipintegrator commit 97d556dae96db5457590a3a257392b6e4093a912-dirty
author pjbriggs
date Wed, 24 Feb 2016 09:25:18 -0500
parents
children d37526cd12aa
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Wed Feb 24 09:25:18 2016 -0500
@@ -0,0 +1,35 @@
+<?xml version="1.0"?>
+<tool_dependency>
+  <package name="python_xlsxwriter" version="0.8.4">
+    <install version="1.0">
+      <actions>
+	<action type="download_by_url">https://pypi.python.org/packages/source/X/XlsxWriter/XlsxWriter-0.8.4.tar.gz</action>
+        <action type="make_directory">$INSTALL_DIR/lib/python</action>
+        <action type="shell_command">
+          export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp; 
+          python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin
+        </action>
+        <action type="set_environment">
+          <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
+          <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+        </action>
+      </actions>
+    </install>
+    <readme>Installs Python module XlsxWriter 0.8.4</readme>
+  </package>
+  <package name="rnachipintegrator" version="1.0.0">
+    <install version="1.0">
+      <actions>
+	<action type="download_by_url">https://pypi.python.org/packages/source/R/RnaChipIntegrator/RnaChipIntegrator-1.0.0.tar.gz</action>
+        <action type="shell_command">
+	  pip install --no-use-wheel --install-option "--prefix=$INSTALL_DIR" .
+	</action>
+        <action type="set_environment">
+          <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+          <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python2.7/site-packages</environment_variable>
+	</action>
+      </actions>
+    </install>
+    <readme>Installs RnaChipIntegrator 1.0.0 from PyPI</readme>
+  </package>
+</tool_dependency>